Rhodanobacter spathiphylli sp nov., a gammaproteobacterium isolated from the roots of Spathiphyllum plants grown in a compost-amended potting mix

被引:57
作者
De Clercq, Deborah
Van Trappen, Stefanie
Cleenwerck, Ilse
Ceustermans, An
Swings, Jean
Coosemans, Jozef
Ryckeboer, Jaak
机构
[1] Katholieke Univ Leuven, Lab Phytopathol & Plant Protect, B-3001 Louvain, Belgium
[2] Univ Ghent, BCCM, LMG Bacteria Coll, Microbiol Lab, B-9000 Ghent, Belgium
关键词
D O I
10.1099/ijs.0.64131-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Three Gram-negative, yellow-pigmented strains were isolated from the rhizospheres of Spathiphyllum plants grown in a compost-amended potting mix. The strains showed biological control activity towards the root-rot plant pathogen Cylindrocladium spathiphylli, and were characterized to determine their taxonomic position. Cells of the strains were non-motile rods, and the strains were oxidase- and catalase-positive and unable to ferment most sugars tested. The three strains showed differences in growth temperature range, optimal growth temperature and some biochemical reactions. The majority of the fatty acids were branched, and large amounts of 15 : 0 iso and 17 : 1 iso omega 9c were present. The 16S rRNA gene sequence (1497 bp) of strain B39(T) showed the highest level of similarity (98(.)5 %) to that of Rhodanobacter fulvus IAM 15025(T), followed by Rhodanobacter lindaniclasticus LMG 18385(T) (96(.)0 %; strain no longer extant), Dyella koreensis CCUG 50883(T) (96(.)4%), Dyellajaponica DSM 16301(T) (96(.)3 %), Frateuria aurantia LMG 1558(T) (96(.)2 %) and Fulvimonas soli LMG 19981(T) (95(.)9 %). Less than 90 % 16S rRNA gene sequence similarity was observed for other members of the Gammaproteobacteria. The mean DNA-DNA reassociation value for the three strains was 100 % and was 25 % when the strains were compared with DNA from R. fulvus LMG 23003 T. The strains had a mean DNA G + C content of 67(.)6 mol%. On the basis of their phylogenetic, genomic and phenotypic properties, the three strains represent a novel species within the genus Rhodanobacter, for which the name Rhodanobacter spathiphylli sp. nov. is proposed. The type strain is strain B39T (= LMG 23181(T) =DSM 17631(T)).
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页码:1755 / 1759
页数:5
相关论文
共 17 条
[1]  
Clercq D. de, 2004, Resource recovery and reuse in organic solid waste management, P317
[2]   Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov. [J].
Coenye, T ;
Falsen, E ;
Vancanneyt, M ;
Hoste, B ;
Govan, JRW ;
Kersters, K ;
Vandamme, P .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1999, 49 :405-413
[3]   FLUOROMETRIC DEOXYRIBONUCLEIC ACID DEOXYRIBONUCLEIC ACID HYBRIDIZATION IN MICRODILUTION WELLS AS AN ALTERNATIVE TO MEMBRANE-FILTER HYBRIDIZATION IN WHICH RADIOISOTOPES ARE USED TO DETERMINE GENETIC RELATEDNESS AMONG BACTERIAL STRAINS [J].
EZAKI, T ;
HASHIMOTO, Y ;
YABUUCHI, E .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1989, 39 (03) :224-229
[4]   Evaluation of a microplate DNA - DNA hybridization method compared with the initial renaturation method [J].
Goris, J ;
Suzuki, K ;
De Vos, P ;
Nakase, T ;
Kersters, K .
CANADIAN JOURNAL OF MICROBIOLOGY, 1998, 44 (12) :1148-1153
[5]   Biocontrol within the context of soil microbial communities: A substrate-dependent phenomenon [J].
Hoitink, HAJ ;
Boehm, MJ .
ANNUAL REVIEW OF PHYTOPATHOLOGY, 1999, 37 :427-446
[6]   Rhodanobacter fulvus sp nov., a β-galactosidase-producing gammaproteobacterium [J].
Im, WT ;
Lee, ST ;
Yokota, A .
JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY, 2004, 50 (03) :143-147
[7]  
MacFaddin J.F., 1980, biochemical tests for identification of medical bacteria
[8]  
Mergaert J, 2002, INT J SYST EVOL MICR, V52, P1285, DOI [10.1099/ijs.0.01995-0, 10.1099/00207713-52-4-1285]
[9]   Characterization of facultative oligotrophic bacteria from polar seas by analysis of their fatty acids and 16S rDNA sequences [J].
Mergaert, J ;
Verhelst, A ;
Cnockaert, MC ;
Tan, TL ;
Swings, J .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 2001, 24 (01) :98-107
[10]   Rhodanobacter lindaniclasticus gen. nov., sp, nov., a lindane-degrading bacterium [J].
Nalin, R ;
Simonet, P ;
Vogel, TM ;
Normand, P .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1999, 49 :19-23