A new method for constructing networks from binary data

被引:490
作者
van Borkulo, Claudia D. [1 ,2 ]
Borsboom, Denny [2 ]
Epskamp, Sacha [2 ]
Blanken, Tessa F. [2 ]
Boschloo, Lynn [1 ]
Schoevers, Robert A. [1 ]
Waldorp, Lourens J. [2 ]
机构
[1] Univ Groningen, Univ Med Ctr Groningen, Interdisciplinary Ctr Psychopathol & Emot Re, Groningen, Netherlands
[2] Univ Amsterdam, Dept Psychology, Psychol Meth, Amsterdam, Netherlands
基金
欧盟地平线“2020”;
关键词
D O I
10.1038/srep05918
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Network analysis is entering fields where network structures are unknown, such as psychology and the educational sciences. A crucial step in the application of network models lies in the assessment of network structure. Current methods either have serious drawbacks or are only suitable for Gaussian data. In the present paper, we present a method for assessing network structures from binary data. Although models for binary data are infamous for their computational intractability, we present a computationally efficient model for estimating network structures. The approach, which is based on Ising models as used in physics, combines logistic regression with model selection based on a Goodness-of-Fit measure to identify relevant relationships between variables that define connections in a network. A validation study shows that this method succeeds in revealing the most relevant features of a network for realistic sample sizes. We apply our proposed method to estimate the network of depression and anxiety symptoms from symptom scores of 1108 subjects. Possible extensions of the model are discussed.
引用
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页数:10
相关论文
共 53 条
[1]  
*AM PSYCH ASS, 2013, DIAGNOST STAT MAN
[2]  
[Anonymous], [No title captured]
[3]   Emergence of scaling in random networks [J].
Barabási, AL ;
Albert, R .
SCIENCE, 1999, 286 (5439) :509-512
[4]   The network takeover [J].
Barabasi, Albert-Laszlo .
NATURE PHYSICS, 2012, 8 (01) :14-16
[5]   The architecture of complex weighted networks [J].
Barrat, A ;
Barthélemy, M ;
Pastor-Satorras, R ;
Vespignani, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (11) :3747-3752
[6]  
Barzel B, 2013, NAT PHYS, V9, P673, DOI [10.1038/nphys2741, 10.1038/NPHYS2741]
[7]   COVARIANCE REGULARIZATION BY THRESHOLDING [J].
Bickel, Peter J. ;
Levina, Elizaveta .
ANNALS OF STATISTICS, 2008, 36 (06) :2577-2604
[8]   Complex networks: Structure and dynamics [J].
Boccaletti, S. ;
Latora, V. ;
Moreno, Y. ;
Chavez, M. ;
Hwang, D. -U. .
PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS, 2006, 424 (4-5) :175-308
[9]   Psychometric perspectives on diagnostic systems [J].
Borsboom, Denny .
JOURNAL OF CLINICAL PSYCHOLOGY, 2008, 64 (09) :1089-1108
[10]   Network Analysis: An Integrative Approach to the Structure of Psychopathology [J].
Borsboom, Denny ;
Cramer, Angelique O. J. .
ANNUAL REVIEW OF CLINICAL PSYCHOLOGY, VOL 9, 2013, 9 :91-121