Stitching together RNA tertiary architectures

被引:142
作者
Hermann, T [1 ]
Patel, DJ [1 ]
机构
[1] Mem Sloan Kettering Canc Ctr, Cellular Biochem & Biophys Program, New York, NY 10021 USA
关键词
metal ions and hydration; ribozymes and catalysis; RNA folding and function; RNA motifs; X-ray; NMR; and molecular modeling;
D O I
10.1006/jmbi.1999.3312
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The powerful explanatory paradigm of molecular biology requiring form to co-evolve with function has again been proven successful when, over the recent two decades, a wealth of biological functions have been uncovered for RNA. Previously considered as a mere mediator of the genetic code, RNA is now acknowledged as a key player in a wide variety of cellular processes. Along with the discovery of novel biological functions of RNA molecules, a number of RNA three-dimensional structures have been solved which beautifully demonstrate the molecular adaptability which allows RNA to participate as a key player in these functions. A distinct repertoire of molecular motifs provides a basis for the assembly of complex RNA tertiary architectures. (C) 1999 Academic Press.
引用
收藏
页码:829 / 849
页数:21
相关论文
共 185 条
[1]   Structure of HIV-1 TAB RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge [J].
AboulEla, F ;
Karn, J ;
Varani, G .
NUCLEIC ACIDS RESEARCH, 1996, 24 (20) :3974-3981
[2]   Remarkable morphological variability of a common RNA folding motif: The GNRA tetraloop-receptor interaction [J].
Abramovitz, DL ;
Pyle, AM .
JOURNAL OF MOLECULAR BIOLOGY, 1997, 266 (03) :493-506
[3]   Structure-based and combinatorial search for new RNA-binding drugs [J].
Afshar, M ;
Prescott, CD ;
Varani, G .
CURRENT OPINION IN BIOTECHNOLOGY, 1999, 10 (01) :59-63
[4]   STRUCTURE OF THE P1 HELIX FROM GROUP-I SELF-SPLICING INTRONS [J].
ALLAIN, FHT ;
VARANI, G .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 250 (03) :333-353
[5]  
Atkins J. F., 1999, RNA WORLD
[6]   Hydration of RNA base pairs [J].
Auffinger, P ;
Westhof, E .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 1998, 16 (03) :693-707
[7]   STRUCTURE OF AN RNA DOUBLE HELIX INCLUDING URACIL-URACIL BASE-PAIRS IN AN INTERNAL LOOP [J].
BAEYENS, KJ ;
DEBONDT, HL ;
HOLBROOK, SR .
NATURE STRUCTURAL BIOLOGY, 1995, 2 (01) :56-62
[8]   A curved RNA helix incorporating an internal loop with G center dot A and A center dot A non-Watson-Crick base pairing [J].
Baeyens, KJ ;
DeBondt, HL ;
Pardi, A ;
Holbrook, SR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (23) :12851-12855
[9]   Placement of protein and RNA structures into a 5 Å-resolution map of the 50S ribosomal subunit [J].
Ban, N ;
Nissen, P ;
Hansen, J ;
Capel, M ;
Moore, PB ;
Steitz, TA .
NATURE, 1999, 400 (6747) :841-847
[10]   A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor [J].
Basu, S ;
Rambo, RP ;
Strauss-Soukup, J ;
Cate, JH ;
Ferré-D'Amaré, AR ;
Strobel, SA ;
Doudna, JA .
NATURE STRUCTURAL BIOLOGY, 1998, 5 (11) :986-992