The PPI3D web server for searching, analyzing and modeling protein-protein interactions in the context of 3D structures

被引：38

作者：

Dapkunas, Justas ^{[1
]}

Timinskas, Albertas ^{[1
]}

Olechnovic, Kliment ^{[1
,2
]}

Margelevicius, Mindaugas ^{[1
]}

Diciunas, Rytis ^{[1
]}

Venclovas, Ceslovas ^{[1
]}

机构：

[1] Vilnius Univ, Inst Biotechnol, LT-10257 Vilnius, Lithuania

[2] Vilnius Univ, Fac Math & Informat, LT-03225 Vilnius, Lithuania

来源：

BIOINFORMATICS | 2017年 / 33卷 / 06期

关键词：

INTERFACES;

D O I：

10.1093/bioinformatics/btw756

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The PPI3D web server is focused on searching and analyzing the structural data on protein-protein interactions. Reducing the data redundancy by clustering and analyzing the properties of interaction interfaces using Voronoi tessellation makes this software a highly effective tool for addressing different questions related to protein interactions.

引用

页码：935 / 937

页数：3

共 4 条

[1] PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes
Baspinar, Alper
Cukuroglu, Engin
Nussinov, Ruth
Keskin, Ozlem
Gursoy, Attila
NUCLEIC ACIDS RESEARCH, 2014, 42 (W1) : W285 - W289
[2] Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests
Sikic, Mile
Tomic, Sanja
Vlahovicek, Kristian
PLOS COMPUTATIONAL BIOLOGY, 2009, 5 (01)
[3] Biological insights from topology independent comparison of protein 3D structures
Nguyen, Minh N.
Madhusudhan, M. S.
NUCLEIC ACIDS RESEARCH, 2011, 39 (14) : e94
[4] Ab Initio Prediction of 3-D Conformations for Protein Long Loops with High Accuracy and Applications to Antibody CDRH3 Modeling
Liang, Shide
Zhang, Chi
Zhu, Mingfu
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2023, 63 (23) : 7568 - 7577

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