New models for human disease from the International Mouse Phenotyping Consortium

被引:47
作者
Cacheiro, Pilar [1 ]
Haendel, Melissa A. [2 ,3 ]
Smedley, Damian [1 ]
Meehan, Terrence
Mason, Jeremy
Mashhadi, Hamed Haseli
Munoz-Fuentes, Violeta
Tocchini, Glauco
Lloyd, Kent K. C.
McKerlie, Colin
Bower, Lynette
Clary, Dave
Nutter, Lauryl M. J.
Flenniken, Ann M.
Teboul, Lydia
Codner, Gemma
Wells, Sara
Herault, Yann
Sorg, Tania
Vasseurm, Laurent
Selloum, Mohammed
Roux, Michel
Jacobs, Hugues
Meziane, Hamid
Champy, Marie-France
About, Ghina Bou
Murray, Steve
Chesler, Elissa
Kumar, Vivek
White, Jacqui
Braun, Robert E.
Beaudet, Arthur L.
Dickinson, Mary E.
Heaney, Jason D.
Lorenzo, Isabel
Lanza, Denise G.
Reynolds, Corey L.
Ward, Christopher S.
Samaco, Rodney C.
Veeraragavan, Surabi
Hsu, Chih-Wei
Christianson, Audrey E.
Gallegos, Juan J.
Seavitt, John Richard
Gaspero, Angelina
Green, Jennie R.
Garza
Garza, Arturo
Bohat, Ritu
Sedlacek, Radislav
机构
[1] Queen Mary Univ London, Sch Med & Dent, William Harvey Res Inst, London, England
[2] Oregon State Univ, Linus Pauling Inst, Corvallis, OR 97331 USA
[3] Oregon State Univ, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
基金
美国国家卫生研究院;
关键词
INFORMATICS PLATFORM; PLEIOTROPY; DISCOVERY;
D O I
10.1007/s00335-019-09804-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The International Mouse Phenotyping Consortium (IMPC) continues to expand the catalogue of mammalian gene function by conducting genome and phenome-wide phenotyping on knockout mouse lines. The extensive and standardized phenotype screens allow the identification of new potential models for human disease through cross-species comparison by computing the similarity between the phenotypes observed in the mutant mice and the human phenotypes associated to their orthologous loci in Mendelian disease. Here, we present an update on the novel disease models available from the most recent data release (DR10.0), with 5861 mouse genes fully or partially phenotyped and a total number of 69,982 phenotype calls reported. With approximately one-third of human Mendelian genes with orthologous null mouse phenotypes described, the range of available models relevant for human diseases keeps increasing. Among the breadth of new data, we identify previously uncharacterized disease genes in the mouse and additional phenotypes for genes with existing mutant lines mimicking the associated disorder. The automated and unbiased discovery of relevant models for all types of rare diseases implemented by the IMPC constitutes a powerful tool for human genetics and precision medicine.
引用
收藏
页码:143 / 150
页数:8
相关论文
共 22 条
  • [1] OMIM.org: leveraging knowledge across phenotype-gene relationships
    Amberger, Joanna S.
    Bocchini, Carol A.
    Scott, Alan F.
    Hamosh, Ada
    [J]. NUCLEIC ACIDS RESEARCH, 2019, 47 (D1) : D1038 - D1043
  • [2] [Anonymous], 2016, GGPLOT2 ELEGANT GRAP
  • [3] Barbaric Ivana, 2007, Briefings in Functional Genomics & Proteomics, V6, P91, DOI 10.1093/bfgp/elm008
  • [4] A large scale hearing loss screen reveals an extensive unexplored genetic landscape for auditory dysfunction
    Bowl, Michael R.
    Simon, Michelle M.
    Ingham, Neil J.
    Greenaway, Simon
    Santos, Luis
    Cater, Heather
    Taylor, Sarah
    Mason, Jeremy
    Kurbatova, Natalja
    Pearson, Selina
    Bower, Lynette R.
    Clary, Dave A.
    Meziane, Hamid
    Reilly, Patrick
    Minowa, Osamu
    Kelsey, Lois
    Tocchini-Valentini, Glauco P.
    Gao, Xiang
    Bradley, Allan
    Skarnes, William C.
    Moore, Mark
    Beaudet, Arthur L.
    Justice, Monica J.
    Seavitt, John
    Dickinson, Mary E.
    Wurst, Wolfgang
    de Angelis, Martin Hrabe
    Herault, Yann
    Wakana, Shigeharu
    Nutter, Lauryl M. J.
    Flenniken, Ann M.
    McKerlie, Colin
    Murray, Stephen A.
    Svenson, Karen L.
    Braun, Robert E.
    West, David B.
    Lloyd, K. C. Kent
    Adams, David J.
    White, Jacqui
    Karp, Natasha
    Flicek, Paul
    Smedley, Damian
    Meehan, Terrence F.
    Parkinson, Helen E.
    Teboul, Lydia M.
    Wells, Sara
    Steel, Karen P.
    Mallon, Ann-Marie
    Brown, Steve D. M.
    [J]. NATURE COMMUNICATIONS, 2017, 8
  • [5] A bioimage informatics platform for high-throughput embryo phenotyping
    Brown, James M.
    Horner, Neil R.
    Lawson, Thomas N.
    Fiegel, Tanja
    Greenaway, Simon
    Morgan, Hugh
    Ring, Natalie
    Santos, Luis
    Sneddon, Duncan
    Teboul, Lydia
    Vibert, Jennifer
    Yaikhom, Gagarine
    Westerberg, Henrik
    Mallon, Ann-Marie
    [J]. BRIEFINGS IN BIOINFORMATICS, 2018, 19 (01) : 41 - 51
  • [6] High-throughput discovery of novel developmental phenotypes
    Dickinson, Mary E.
    Flenniken, Ann M.
    Ji, Xiao
    Teboul, Lydia
    Wong, Michael D.
    White, Jacqueline K.
    Meehan, Terrence F.
    Weninger, Wolfgang J.
    Westerberg, Henrik
    Adissu, Hibret
    Baker, Candice N.
    Bower, Lynette
    Brown, James M.
    Caddle, L. Brianna
    Chiani, Francesco
    Clary, Dave
    Cleak, James
    Daly, Mark J.
    Denegre, James M.
    Doe, Brendan
    Dolan, Mary E.
    Edie, Sarah M.
    Fuchs, Helmut
    Gailus-Durner, Valerie
    Galli, Antonella
    Gambadoro, Alessia
    Gallegos, Juan
    Guo, Shiying
    Horner, Neil R.
    Hsu, Chih-Wei
    Johnson, Sara J.
    Kalaga, Sowmya
    Keith, Lance C.
    Lanoue, Louise
    Lawson, Thomas N.
    Lek, Monkol
    Mark, Manuel
    Arschall, Susan M.
    Mason, Jeremy
    McElwee, Melissa L.
    Newbigging, Susan
    Nutter, Lauryl M. J.
    Peterson, Kevin A.
    Ramirez-Solis, Ramiro
    Rowland, Douglas J.
    Ryder, Edward
    Samocha, Kaitlin E.
    Seavitt, John R.
    Selloum, Mohammed
    Szoke-Kovacs, Zsombor
    [J]. NATURE, 2016, 537 (7621) : 508 - +
  • [7] Absence of CFAP69 Causes Male Infertility due to Multiple Morphological Abnormalities of the Flagella in Human and Mouse
    Dong, Frederick N.
    Amiri-Yekta, Amir
    Martinez, Guillaume
    Saut, Antoine
    Tek, Julie
    Stouvenel, Laurence
    Lores, Patrick
    Karaouzene, Thomas
    Thierry-Mieg, Nicolas
    Satre, Veronique
    Brouillet, Sophie
    Daneshipour, Abbas
    Hosseini, Seyedeh Hanieh
    Bonhivers, Melanie
    Gourabi, Hamid
    Dulioust, Emmanuel
    Arnoult, Christophe
    Toure, Aminata
    Ray, Pierre F.
    Zhao, Haiqing
    Coutton, Charles
    [J]. AMERICAN JOURNAL OF HUMAN GENETICS, 2018, 102 (04) : 636 - 648
  • [8] Genetic pleiotropy in complex traits and diseases: implications for genomic medicine
    Gratten, Jacob
    Visscher, Peter M.
    [J]. GENOME MEDICINE, 2016, 8
  • [9] Hunt SE, 2018, DATABASE-OXFORD, DOI [10.1093/database/bay119, 10.1186/1471-2164-11-293]
  • [10] Landscape of Pleiotropic Proteins Causing Human Disease: Structural and System Biology Insights
    Ittisoponpisan, Sirawit
    Alhuzimi, Eman
    Sternberg, Michael J. E.
    David, Alessia
    [J]. HUMAN MUTATION, 2017, 38 (03) : 289 - 296