An introductory overview of action-derived molecular dynamics for multiple time-scale simulations

被引:15
|
作者
Lee, IH
Kim, SY
Jun, S [1 ]
机构
[1] Korea Adv Inst Sci & Technol, Dept Mech Engn, Taejon 305701, South Korea
[2] Korea Res Inst Stand & Sci, Div Chem Metrol & Mat Evaluat, Taejon 305600, South Korea
关键词
action-derived molecular dynamics; infrequent event; least action principles; activation energy;
D O I
10.1016/j.cma.2003.12.043
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
In this introductory paper, we briefly review the action-derived molecular dynamics (ADMD) that has recently been developed for the atomistic simulation of infrequent-event systems such as surface diffusion process and complex molecular formation. The method is specifically designed to find a dynamical trajectory when the final atomic configuration is given as a priori. ADMD has its theoretical foundation in the least action principles. According to the formulation, the most probable dynamical trajectory connecting the initial and final atomic configurations, is determined through minimizing an appropriate object function that is derived from the classical action by imposing dynamical conditions as required as the conservations of total energy. It thus enables us to find the actual dynamical path of the systems. which is a distinguishing feature compared with other similar methods such as the nudged elastic band method. In this paper, we present our recent simulation results using ADMD, as well as an introduction to its theoretical background and enhanced algorithms. (C) 2004 Elsevier B.V. All rights reserved.
引用
收藏
页码:1633 / 1644
页数:12
相关论文
共 50 条
  • [21] Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems
    Feenstra, KA
    Hess, B
    Berendsen, HJC
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 1999, 20 (08) : 786 - 798
  • [22] Concurrent Multi-Domain Simulations in Structural Dynamics Using Multiple Grid and Multiple Time-Scale (MGMT) Method
    Ruparel, Tejas
    Eskandarian, Azim
    Lee, James D.
    INTERNATIONAL JOURNAL OF COMPUTATIONAL METHODS, 2018, 15 (04)
  • [23] A parallel multiple time-scale reversible integrator for dynamics simulation
    Jia, ZD
    Leimkuhler, B
    FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, 2003, 19 (03): : 415 - 424
  • [24] ON THE STABILITY OF MULTIPLE TIME-SCALE SYSTEMS
    ABED, EH
    TITS, AL
    INTERNATIONAL JOURNAL OF CONTROL, 1986, 44 (01) : 211 - 218
  • [25] Advanced multiple time scale molecular dynamics
    Omelyan, Igor P.
    JOURNAL OF CHEMICAL PHYSICS, 2009, 131 (10):
  • [26] Hamiltonian based resonance-free approach for enabling very large time steps in multiple time-scale molecular dynamics
    Abreu, Charlles R. A.
    Tuckerman, Mark E.
    MOLECULAR PHYSICS, 2021, 119 (19-20)
  • [27] Automated Event Detection and Activity Monitoring in Long Time-Scale Molecular Dynamics
    Wriggers, Willy
    Stafford, Kate A.
    Shan, Yibing
    Piana-Agostinetti, Stefano
    Maragakis, Paul
    Lindorff-Larsen, Kresten
    Miller, Patrick J.
    Eastwood, Michael P.
    Dror, Ron O.
    Shaw, David E.
    BIOPHYSICAL JOURNAL, 2009, 96 (03) : 364A - 365A
  • [28] Dynamical behavior of one-dimensional water molecule chains in zeolites: Nanosecond time-scale molecular dynamics simulations of bikitaite
    Demontis, P
    Stara, G
    Suffritti, GB
    JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (19): : 9233 - 9244
  • [29] On the reconstitution problem in the multiple time-scale method
    Luongo, A
    Paolone, A
    NONLINEAR DYNAMICS, 1999, 19 (02) : 133 - 156
  • [30] On the Reconstitution Problem in the Multiple Time-Scale Method
    A. Luongo
    A. Paolone
    Nonlinear Dynamics, 1999, 19 (2) : 135 - 158