msa: an R package for multiple sequence alignment

被引：454

作者：

Bodenhofer, Ulrich ^{[1
]}

Bonatesta, Enrico ^{[1
]}

Horejs-Kainrath, Christoph ^{[1
]}

Hochreiter, Sepp ^{[1
]}

机构：

[1] Johannes Kepler Univ Linz, Inst Bioinformat, A-4040 Linz, Austria

来源：

BIOINFORMATICS | 2015年 / 31卷 / 24期

关键词：

CLUSTAL-W; MUSCLE;

D O I：

10.1093/bioinformatics/btv494

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Although the R platform and the add-on packages of the Bioconductor project are widely used in bioinformatics, the standard task of multiple sequence alignment has been neglected so far. The msa package, for the first time, provides a unified R interface to the popular multiple sequence alignment algorithms ClustalW, ClustalOmega and MUSCLE. The package requires no additional software and runs on all major platforms. Moreover, the msa package provides an R interface to the powerful (LTEX)-T-A package T(E)Xshade which allows for flexible and customizable plotting of multiple sequence alignments.

引用

页码：3997 / 3999

页数：3

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