Modeling studies of heterogeneities in glycolytic oscillations in HeLa cervical cancer cells

被引:15
作者
Amemiya, Takashi [1 ]
Shibata, Kenichi [1 ]
Du, Yichen [1 ]
Nakatai, Satoshi [2 ]
Yamaguchi, Tomohiko [3 ]
机构
[1] Yokohama Natl Univ, Grad Sch Environm & Informat Sci, Hodogaya Ku, 79-7 Tokiwadai, Yokohama, Kanagawa 2408501, Japan
[2] Hiroshima Univ, Grad Sch Sci, 1-3-1 Kagamiyama, Higashihiroshima 7398526, Japan
[3] Meiji Inst Adv Study Math Sci MIMS, Nakano Ku, 4-21-1 Nakano, Tokyo 1648525, Japan
基金
日本学术振兴会;
关键词
CARBOHYDRATE-METABOLISM; PHASE-TRANSITIONS; STEADY-STATE; YEAST; GLUCOSE; SYNCHRONIZATION; STIMULATION; FIBROBLASTS; POPULATIONS; MECHANISMS;
D O I
10.1063/1.5087216
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
Previous experiments demonstrated that a population of HeLa cells starved of glucose or both glucose and serum exhibited a strong heterogeneity in the glycolytic oscillations in terms of the number of oscillatory cells, periods of oscillations, and duration of oscillations. Here, we report numerical simulations of this heterogeneous oscillatory behavior in HeLa cells by using a newly developed mathematical model. It is simple enough that we can apply a mathematical analysis, but capture the core of the glycolytic pathway and the activity of the glucose transporter (GLUT). Lognormal distributions of the values of the four rate constants in the model were obtained from the experimental distributions in the periods of oscillations. Thus, the heterogeneity in the periods of oscillations can be attributed to the difference in the rate constants of the enzymatic reactions. The activity of GLUT is found to determine whether the HeLa cells were oscillatory or non-oscillatory under the same experimental conditions. Simulation with the log-normal distribution of the maximum uptake velocity of glucose and the four randomized rate constants based on the log-normal distributions successfully reproduced the time-dependent number of oscillatory cells (oscillatory ratios) under the two starving conditions. The difference in the initial values of the metabolites has little effect on the simulated results. Published under license by AIP Publishing.
引用
收藏
页数:10
相关论文
共 43 条
[1]   Effect of nutrient starvation on the cellular composition and metabolic capacity of Saccharomyces cerevisiae [J].
Albers, Eva ;
Larsson, Christer ;
Andlid, Thomas ;
Walsh, Michael C. ;
Gustafsson, Lena .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73 (15) :4839-4848
[2]   Primordial oscillations in life: Direct observation of glycolytic oscillations in individual HeLa cervical cancer cells [J].
Amemiya, Takashi ;
Shibata, Kenichi ;
Itoh, Yoshihiro ;
Itoh, Kiminori ;
Watanabe, Masatoshi ;
Yamaguchi, Tomohiko .
CHAOS, 2017, 27 (10)
[3]   Collective and individual glycolytic oscillations in yeast cells encapsulated in alginate microparticles [J].
Amemiya, Takashi ;
Obase, Kouhei ;
Hiramatsu, Naoki ;
Itoh, Kiminori ;
Shibata, Kenichi ;
Takinoue, Masahiro ;
Yamamoto, Tetsuya ;
Yamaguchi, Tomohiko .
CHAOS, 2015, 25 (06)
[4]   INCREASE OF THE GLYCOLYTIC RATE IN HUMAN RESTING FIBROBLASTS FOLLOWING SERUM STIMULATION - THE POSSIBLE ROLE OF THE FRUCTOSE-2,6-BISPHOSPHATE [J].
BRUNI, P ;
FARNARARO, M ;
VASTA, V ;
DALESSANDRO, A .
FEBS LETTERS, 1983, 159 (1-2) :39-42
[5]  
CHANCE B, 1959, J BIOL CHEM, V234, P2421
[6]   Glycolytic Oscillations and Limits on Robust Efficiency [J].
Chandra, Fiona A. ;
Buzi, Gentian ;
Doyle, John C. .
SCIENCE, 2011, 333 (6039) :187-192
[7]   Observations on the carbohydrate metabolism of tumours. [J].
Crabtree, HG .
BIOCHEMICAL JOURNAL, 1929, 23 (03) :536-545
[8]   Sustained oscillations in living cells [J].
Dano, S ;
Sorensen, PG ;
Hynne, F .
NATURE, 1999, 402 (6759) :320-322
[9]   Dynamical quorum sensing: Population density encoded in cellular dynamics [J].
De Monte, Silvia ;
d'Ovidio, Francesco ;
Dano, Sune ;
Sorensen, Preben Graae .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (47) :18377-18381
[10]   The Warburg and Crabtree effects: On the origin of cancer cell energy metabolism and of yeast glucose repression [J].
Diaz-Ruiz, Rodrigo ;
Rigoulet, Michel ;
Devin, Anne .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2011, 1807 (06) :568-576