Random Effects Models in a Meta-Analysis of the Accuracy of Two Diagnostic Tests Without a Gold Standard

被引:63
作者
Chu, Haitao [1 ,2 ]
Chen, Sining [3 ]
Louis, Thomas A. [4 ]
机构
[1] Univ N Carolina, Dept Biostat, Chapel Hill, NC 27599 USA
[2] Univ N Carolina, Lineberger Comprehens Canc Ctr, Chapel Hill, NC 27599 USA
[3] Johns Hopkins Bloomberg Sch Publ Hlth, Dept Environm Hlth Sci, Baltimore, MD 21205 USA
[4] Johns Hopkins Bloomberg Sch Publ Hlth, Dept Biostat, Baltimore, MD 21205 USA
关键词
Bayesian hierarchical model; Diagnostic test; Generalized linear mixed model; Gold standard; Meta-analysis; Missing data; LYNCH-SYNDROME; MICROSATELLITE INSTABILITY; CONDITIONAL DEPENDENCE; BETHESDA GUIDELINES; BAYESIAN-ESTIMATION; GERMLINE MUTATIONS; DISEASE PREVALENCE; SENSITIVITY; CANCER; SPECIFICITY;
D O I
10.1198/jasa.2009.0017
中图分类号
O21 [概率论与数理统计]; C8 [统计学];
学科分类号
020208 ; 070103 ; 0714 ;
摘要
In studies of the accuracy of diagnostic tests, it is common that both the diagnostic test itself and the reference test are imperfect. This is the case for the microsatellite instability test, which is routinely used as a prescreening procedure to identify individuals with Lynch syndrome, the most common hereditary colorectal cancer syndrome. The microsatellite instability test is known to have imperfect sensitivity and specificity. Meanwhile, the reference test, mutation analysis, is also imperfect. We evaluate this test via a random effects meta-analysis of 17 studies. Study-specific random effects account for between-study heterogeneity in mutation prevalence, test sensitivities and specificities under a nonlinear mixed effects model and a Bayesian hierarchical model. Using model selection techniques, we explore a range of random effects models to identify a best-fitting, model. We also evaluate sensitivity to the conditional independence assumption between the microsatellite instability test and the Mutation analysis by allowing for correlation between them. Finally. we use simulations to illustrate the importance of including appropriate random effects and the impact of overfitting. underfitting and misfitting on model performance. Our approach can be used to estimate the accuracy of two imperfect diagnostic tests from a meta-analysis of multiple studies or a multicenter study when the prevalence of disease, test sensitivities and/or specificities may be heterogeneous among studies or centers.
引用
收藏
页码:512 / 523
页数:12
相关论文
共 52 条
  • [1] On estimating diagnostic accuracy from studies with multiple raters and partial gold standard evaluation
    Albert, Paul S.
    Dodd, Lori E.
    [J]. JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2008, 103 (481) : 61 - 73
  • [2] A cautionary note on the robustness of latent class models for estimating diagnostic error without a gold standard
    Albert, PS
    Dodd, LE
    [J]. BIOMETRICS, 2004, 60 (02) : 427 - 435
  • [3] Latent class modeling approaches for assessing diagnostic error without a gold standard: With applications to p53 immunohistochemical assays in bladder tumors
    Albert, PS
    McShane, LM
    Shih, JH
    [J]. BIOMETRICS, 2001, 57 (02) : 610 - 619
  • [4] Andersen S, 1997, AM J EPIDEMIOL, V145, P290
  • [5] [Anonymous], 2001, SYSTEMATIC REV HLTH, DOI DOI 10.1002/9780470693926
  • [6] Boland CR, 1998, CANCER RES, V58, P5248
  • [7] General methods for monitoring convergence of iterative simulations
    Brooks, SP
    Gelman, A
    [J]. JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS, 1998, 7 (04) : 434 - 455
  • [8] Burnham K.P., 1998, MODEL SELECTION INFE
  • [9] Carlin B. P., 2009, BAYES EMPIRICAL BAYE
  • [10] Prediction of germline mutations and cancer risk in the Lynch syndrome
    Chen, Sining
    Wang, Wenyi
    Lee, Shing
    Nafa, Khedoudja
    Lee, Johanna
    Romans, Kathy
    Watson, Patrice
    Gruber, Stephen B.
    Euhus, David
    Kinzler, Kenneth W.
    Jass, Jeremy
    Gallinger, Steven
    Lindor, Noralane M.
    Casey, Graham
    Ellis, Nathan
    Giardiello, Francis M.
    Offit, Kenneth
    Parmigiani, Giovanni
    [J]. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2006, 296 (12): : 1479 - 1487