The RavA-ViaA Chaperone-Like System Interacts with and Modulates the Activity of the Fumarate Reductase Respiratory Complex

被引:24
作者
Wong, Keith S. [1 ]
Bhandari, Vaibhav [1 ]
Janga, Sarath Chandra [2 ]
Houry, Walid A. [1 ,3 ]
机构
[1] Univ Toronto, Dept Biochem, Toronto, ON M5G 1M1, Canada
[2] Indiana Univ Purdue Univ, Sch Informat & Comp, Dept Biohlth Informat, Indianapolis, IN 46202 USA
[3] Univ Toronto, Dept Chem, Toronto, ON M5S 3H6, Canada
基金
加拿大健康研究院; 加拿大自然科学与工程研究理事会;
关键词
ATPases associated with diverse cellular activities (AAA); chaperone; flavoprotein; respiratory chain; von Willebrand factor A domain; ESCHERICHIA-COLI; LYSINE DECARBOXYLASE; FNR; EXPRESSION; PROMOTER; GENES; IDENTIFICATION; PROTEINS; DEHYDROGENASE; PREDICTION;
D O I
10.1016/j.jmb.2016.12.008
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Regulatory ATPase variant A (RavA) is a MoxR AAA+ protein that functions together with a partner protein that we termed VWA interacting with AAA+ ATPase (ViaA) containing a von Willebrand Factor A domain. However, the functional role of RavA-ViaA in the cell is not yet well established. Here, we show that RavA-ViaA are functionally associated with anaerobic respiration in Escherichia coli through interactions with the fumarate reductase (Frd) electron transport complex. Expression analysis of ravA and viaA genes showed that both proteins are co-expressed with multiple anaerobic respiratory genes, many of which are regulated by the anaerobic transcriptional regulator Fnr. Consistently, the expression of both ravA and viaA was found to be dependent on Fnr in cells grown under oxygen-limiting condition. ViaA was found to physically interact with FrdA, the flavin-containing subunit of the Frd complex. Both RavA and the Fe S-containing subunit of the Frd complex, FrdB, regulate this interaction. Importantly, Frd activity was observed to increase in the absence of RavA and ViaA. This indicates that RavA and ViaA modulate the activity of the Frd complex, signifying a potential regulatory chaperone-like function for RavA-ViaA during bacterial anaerobic respiration with fumarate as the terminal electron acceptor. (C) 2016 Elsevier Ltd. All rights reserved.
引用
收藏
页码:324 / 344
页数:21
相关论文
共 69 条
[1]   Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants:: the Keio collection [J].
Baba, Tomoya ;
Ara, Takeshi ;
Hasegawa, Miki ;
Takai, Yuki ;
Okumura, Yoshiko ;
Baba, Miki ;
Datsenko, Kirill A. ;
Tomita, Masaru ;
Wanner, Barry L. ;
Mori, Hirotada .
MOLECULAR SYSTEMS BIOLOGY, 2006, 2 (1) :2006.0008
[2]   Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli [J].
Babu, Mohan ;
Arnold, Roland ;
Bundalovic-Torma, Cedoljub ;
Gagarinova, Alla ;
Wong, Keith S. ;
Kumar, Ashwani ;
Stewart, Geordie ;
Samanfar, Bahram ;
Aoki, Hiroyuki ;
Wagih, Omar ;
Vlasblom, James ;
Phanse, Sadhna ;
Lad, Krunal ;
Yu, Angela Yeou Hsiung ;
Graham, Christopher ;
Jin, Ke ;
Brown, Eric ;
Golshani, Ashkan ;
Kim, Philip ;
Moreno-Hagelsieb, Gabriel ;
Greenblatt, Jack ;
Houry, Walid A. ;
Parkinson, John ;
Emili, Andrew .
PLOS GENETICS, 2014, 10 (02)
[3]  
Babu Mohan, 2009, Methods Mol Biol, V564, P373, DOI 10.1007/978-1-60761-157-8_22
[4]   Interaction of Mycobacterium tuberculosis Virulence Factor RipA with Chaperone MoxR1 Is Required for Transport through the TAT Secretion System [J].
Bhuwan, Manish ;
Arora, Naresh ;
Sharma, Ashish ;
Khubaib, Mohd ;
Pandey, Saurabh ;
Chaudhuri, Tapan Kumar ;
Hasnain, Seyed Ehtesham ;
Ehtesham, Nasreen Zafar .
MBIO, 2016, 7 (02)
[5]   DIMETHYL-SULFOXIDE REDUCTASE-ACTIVITY BY ANAEROBICALLY GROWN ESCHERICHIA-COLI HB101 [J].
BILOUS, PT ;
WEINER, JH .
JOURNAL OF BACTERIOLOGY, 1985, 162 (03) :1151-1155
[6]   Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks [J].
Carlson, MRJ ;
Zhang, B ;
Fang, ZX ;
Mischel, PS ;
Horvath, S ;
Nelson, SF .
BMC GENOMICS, 2006, 7 (1)
[7]   Succinate dehydrogenase and fumarate reductase from Escherichia coli [J].
Cecchini, G ;
Schröder, I ;
Gunsalus, RP ;
Maklashina, E .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2002, 1553 (1-2) :140-157
[8]   A novel ensemble learning method for de novo computational identification of DNA binding sites [J].
Chakravarty, Arijit ;
Carlson, Jonathan M. ;
Khetani, Radhika S. ;
Gross, Robert H. .
BMC BIOINFORMATICS, 2007, 8 (1)
[9]   Discovery of Fur binding site clusters in Escherichia coli by information theory models [J].
Chen, Zehua ;
Lewis, Karen A. ;
Shultzaberger, Ryan K. ;
Lyakhov, Ilya G. ;
Zheng, Ming ;
Doan, Bernard ;
Storz, Gisela ;
Schneider, Thomas D. .
NUCLEIC ACIDS RESEARCH, 2007, 35 (20) :6762-6777
[10]   ORGANIZATION OF GENES ENCODING MEMBRANE-PROTEINS OF THE ESCHERICHIA-COLI FERRIENTEROBACTIN PERMEASE [J].
CHENAULT, SS ;
EARHART, CF .
MOLECULAR MICROBIOLOGY, 1991, 5 (06) :1405-1413