Methanogenic archaea in peatlands

被引:49
作者
Brauer, Suzanna L. [1 ]
Basiliko, Nathan [2 ,3 ]
Siljanen, Henri M. P. [4 ]
Zinder, Stephen H. [5 ]
机构
[1] Appalachian State Univ, Dept Biol, ASU Box 32027,572 Rivers St, Boone, NC 28608 USA
[2] Laurentian Univ, Dept Biol, 935 Ramsey Lake Rd, Sudbury, ON P3E 2C6, Canada
[3] Laurentian Univ, Vale Living Lakes Ctr, 935 Ramsey Lake Rd, Sudbury, ON P3E 2C6, Canada
[4] Eastern Finland Univ, Dept Environm & Biol Sci, Biogeochem Res Grp, Snellmania Room 4042,Yliopistonranta 1, Kuopio 70210, Finland
[5] Cornell Univ, Dept Microbiol, 272 Wing Hall, Ithaca, NY 14850 USA
基金
芬兰科学院;
关键词
methane; fen; bog; climate; sedge; permafrost; METHANE PRODUCTION; SP NOV; COMMUNITY STRUCTURE; ACIDIC PEAT; GEN; NOV; CH4; PRODUCTION; SP; NEW-YORK; PHENOTYPIC CHARACTERIZATION; ACIDIPHILIC METHANOGEN;
D O I
10.1093/femsle/fnaa172
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Methane emission feedbacks in wetlands are predicted to influence global climate under climate change and other anthropogenic stressors. Herein, we review the taxonomy and physiological ecology of the microorganisms responsible for methane production in peatlands. Common in peat soils are five of the eight described orders of methanogens spanning three phyla (Euryarchaeota, Halobacterota and Thermoplasmatota). The phylogenetic affiliation of sequences found in peat suggest that members of the thus-far-uncultivated group Candidatus Bathyarchaeota (representing a fourth phylum) may be involved in methane cycling, either anaerobic oxidation of methane and/or methanogenesis, as at least a few organisms within this group contain the essential gene, mcrA, according to metagenomic data. Methanogens in peatlands are notoriously challenging to enrich and isolate; thus, much remains unknown about their physiology and how methanogen communities will respond to environmental changes. Consistent patterns of changes in methanogen communities have been reported across studies in permafrost peatland thaw where the resulting degraded feature is thermokarst. However much remains to be understood regarding methanogen community feedbacks to altered hydrology and warming in other contexts, enhanced atmospheric pollution (N, S and metals) loading and direct anthropogenic disturbances to peatlands like drainage, horticultural peat extraction, forestry and agriculture, as well as post-disturbance reclamation.
引用
收藏
页数:17
相关论文
共 147 条
[1]   Spatiotemporal variations in the abundances of the prokaryotic rRNA genes, pmoA, and mcrA in the deep layers of a peat bog in Sarobetsu-genya wetland, Japan [J].
Akiyama, Masaru ;
Shimizu, Satoru ;
Sakai, Toshiaki ;
Ioka, Seiichiro ;
Ishijima, Yoji ;
Naganuma, Takeshi .
LIMNOLOGY, 2011, 12 (01) :1-9
[2]  
[Anonymous], 2010, GEOPHYS RES LETT
[3]  
[Anonymous], 1997, CANADIAN WETLAND CLA, P68
[4]  
Baker BJ, 2020, NAT MICROBIOL, V5, P887, DOI 10.1038/s41564-020-0715-z
[5]   Methane biogeochemistry and methanogen communities in two northern peatland ecosystems, New York State [J].
Basiliko, N ;
Yavitt, JB ;
Dees, PM ;
Merkel, SM .
GEOMICROBIOLOGY JOURNAL, 2003, 20 (06) :563-577
[6]   Influence of Ni, Co, Fe, and Na additions on methane production in Sphagnum-dominated Northern American peatlands [J].
Basiliko, N ;
Yavitt, JB .
BIOGEOCHEMISTRY, 2001, 52 (02) :133-153
[7]   Controls on bacterial and archaeal community structure and greenhouse gas production in natural, mined, and restored Canadian peatlands [J].
Basiliko, Nathan ;
Henry, Kevin ;
Gupta, Varun ;
Moore, Tim R. ;
Driscoll, Brian T. ;
Dunfield, Peter F. .
FRONTIERS IN MICROBIOLOGY, 2013, 4
[8]   Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens [J].
Berghuis, Bojk A. ;
Yu, Feiqiao Brian ;
Schulz, Frederik ;
Blainey, Paul C. ;
Woyke, Tanja ;
Quake, Stephen R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 116 (11) :5037-5044
[9]   Regulation of methane production in a Swedish acid mire by pH, temperature and substrate [J].
Bergman, I ;
Svensson, BH ;
Nilsson, M .
SOIL BIOLOGY & BIOCHEMISTRY, 1998, 30 (06) :729-741
[10]   Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru [J].
Biddle, JF ;
Lipp, JS ;
Lever, MA ;
Lloyd, KG ;
Sorensen, KB ;
Anderson, R ;
Fredricks, HF ;
Elvert, M ;
Kelly, TJ ;
Schrag, DP ;
Sogin, ML ;
Brenchley, JE ;
Teske, A ;
House, CH ;
Hinrichs, KU .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (10) :3846-3851