Complete mitogenome data from a European specimen of Ostrinia scapulalis (Walker, 1859) (Lepidoptera, Pyraloidea, Crambidae, Pyraustinae)

被引:2
作者
Gschloessl, Bernhard [1 ]
Audiot, Philippe [1 ]
Nidelet, Sabine [1 ]
Kergoat, Gael J. [1 ]
Streiff, Rejane [1 ]
机构
[1] Univ Montpellier, INRAE, CIRAD, CBGP,IRD,Montpellier SupAgro, Montpellier, France
来源
DATA IN BRIEF | 2020年 / 33卷
关键词
Annotation; Assembly; Crambidae; Lepidoptera; Mitogenome; Phylogeny; Pyraloidea; MITOCHONDRIAL GENOME; BORER;
D O I
10.1016/j.dib.2020.106427
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We present an assembly and annotation of the mitogenome of a European specimen of the Adzuki bean borer, Ostrinia scapulalis (Walker, 1859). The data were obtained by combining WGS data issue of a de novo and a previously published sequence library (Gschloessl et al., 2018). We also provide the phylogenetic positioning of the mitogenome within the Ostrinia genus, the Crambidae family and with more distant Lepidoptera species. (c) 2020 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/)
引用
收藏
页数:8
相关论文
共 18 条
  • [1] ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
  • [2] MITOS: Improved de novo metazoan mitochondrial genome annotation
    Bernt, Matthias
    Donath, Alexander
    Juehling, Frank
    Externbrink, Fabian
    Florentz, Catherine
    Fritzsch, Guido
    Puetz, Joern
    Middendorf, Martin
    Stadler, Peter F.
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) : 313 - 319
  • [3] Trimmomatic: a flexible trimmer for Illumina sequence data
    Bolger, Anthony M.
    Lohse, Marc
    Usadel, Bjoern
    [J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120
  • [4] Animal mitochondrial genomes
    Boore, JL
    [J]. NUCLEIC ACIDS RESEARCH, 1999, 27 (08) : 1767 - 1780
  • [5] OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
    Greiner, Stephan
    Lehwark, Pascal
    Bock, Ralph
    [J]. NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) : W59 - W64
  • [6] De novo genome and transcriptome resources of the Adzuki bean borer Ostrinia scapulalis (Lepidoptera: Crambidae)
    Gschloessl, B.
    Dorkeld, F.
    Audiot, P.
    Bretaudeau, A.
    Kerdelhue, C.
    Streiff, R.
    [J]. DATA IN BRIEF, 2018, 17 : 781 - 787
  • [7] PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference
    Guindon, S
    Lethiec, F
    Duroux, P
    Gascuel, O
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : W557 - W559
  • [8] Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach
    Hahn, Christoph
    Bachmann, Lutz
    Chevreux, Bastien
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (13) : e129
  • [9] CAP3: A DNA sequence assembly program
    Huang, XQ
    Madan, A
    [J]. GENOME RESEARCH, 1999, 9 (09) : 868 - 877
  • [10] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
    Katoh, Kazutaka
    Standley, Daron M.
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780