The complete plastid genome of Aletris megalantha (Nartheciaceae), an endemic species from Yunnan Province of China

被引:0
作者
Wang, Yong-Chao [1 ]
Zhang, Zhi-Rong [2 ]
Fu, Chao-Nan [3 ]
Yan, Li-Jun [1 ]
机构
[1] Yunnan Normal Univ, Sch Vocat & Tech Educ, Kunming 650092, Yunnan, Peoples R China
[2] Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming, Yunnan, Peoples R China
[3] Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 01期
基金
中国国家自然科学基金;
关键词
Aletris megalantha; endemic species; Nartheciaceae; phylogeny; plastid genome;
D O I
10.1080/23802359.2020.1866459
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Aletris megalantha F. T. Wang & Tang is an herbal plant species endemic to Yunnan Province of China. Its complete plastid genome sequence was 154,704 bp in length, with a large single-copy (LSC) region of 83,265 bp, a small single-copy (SSC) region of 18,127 bp, and a pair of inverted repeat regions (IRs) of 26,656 bp. The whole plastid genome encoded 132 genes, including 85 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The overall GC content of A. megalantha plastid genome was 37.4%. Maximum likelihood phylogenetic analysis based on 14 taxa indicated that A. megalantha is evolutionarily close to A. spicata.
引用
收藏
页码:293 / 294
页数:2
相关论文
共 9 条
  • [1] THE RETENTION INDEX AND HOMOPLASY EXCESS
    FARRIS, JS
    [J]. SYSTEMATIC ZOOLOGY, 1989, 38 (04): : 406 - 407
  • [2] GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
    Jin, Jian-Jun
    Yu, Wen-Bin
    Yang, Jun-Bo
    Song, Yu
    dePamphilis, Claude W.
    Yi, Ting-Shuang
    Li, De-Zhu
    [J]. GENOME BIOLOGY, 2020, 21 (01)
  • [3] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
    Katoh, Kazutaka
    Standley, Daron M.
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780
  • [4] MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
    Kumar, Sudhir
    Stecher, Glen
    Li, Michael
    Knyaz, Christina
    Tamura, Koichiro
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2018, 35 (06) : 1547 - 1549
  • [5] PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
    Qu, Xiao-Jian
    Moore, Michael J.
    Li, De-Zhu
    Yi, Ting-Shuang
    [J]. PLANT METHODS, 2019, 15 (1)
  • [6] RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    Stamatakis, Alexandros
    [J]. BIOINFORMATICS, 2006, 22 (21) : 2688 - 2690
  • [7] Wu ZY, 1997, FLORA YUNNANICA TOMU, P652
  • [8] PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
    Zhang, Dong
    Gao, Fangluan
    Jakovlic, Ivan
    Zou, Hong
    Zhang, Jin
    Li, Wen X.
    Wang, Gui T.
    [J]. MOLECULAR ECOLOGY RESOURCES, 2020, 20 (01) : 348 - 355
  • [9] Delimitation and phylogeny of Aletris (Nartheciaceae) with implications for perianth evolution
    Zhao, Yi-Min
    Wang, Wei
    Zhang, Shu-Ren
    [J]. JOURNAL OF SYSTEMATICS AND EVOLUTION, 2012, 50 (02) : 135 - 145