共 49 条
18O2-Labeling in Quantitative Proteomic Strategies: A Status Report
被引:72
作者:

Fenselau, Catherine
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USA Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USA

Yao, Xudong
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Connecticut, Dept Chem, Storrs, CT 06269 USA Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USA
机构:
[1] Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USA
[2] Univ Connecticut, Dept Chem, Storrs, CT 06269 USA
关键词:
quantitative proteomics;
isotope labeling;
clinical proteomics;
(18)O-labeling;
absolute quantitation;
tissue proteomics;
plasma proteome;
biofilms;
mitochondria;
plasma membrane;
formalin-fixed paraffin;
laser capture micro-dissection;
affinity fractionation;
protein cross-linking;
glycoproteins;
CATALYZED O-16-TO-O-18 EXCHANGE;
MASS-SPECTROMETRY;
BACK-EXCHANGE;
LC-MS;
RELATIVE QUANTIFICATION;
MITOCHONDRIAL PROTEINS;
INTERNAL STANDARDS;
PLASMA-MEMBRANE;
SOFTWARE TOOL;
ACCURATE MASS;
D O I:
10.1021/pr8009879
中图分类号:
Q5 [生物化学];
学科分类号:
071010 ;
081704 ;
摘要:
Enzyme-catalyzed (18)O(2)-labeling offers a universal strategy for uniform labeling of all peptides from any kind of proteins, including post-translationally modified proteins. It is applicable to clinical samples with unrivaled sensitivity. This review discusses strengths and limitations, and advocates the separation of proteolysis from the labeling step. Continued advances in software will facilitate widespread use of enzyme-catalyzed (18)O(2)-labeling to determine changes in protein abundances.
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收藏
页码:2140 / 2143
页数:4
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共 49 条
- [1] Solution isoelectric focusing for peptide analysis: Comparative investigation of an insoluble nuclear protein fraction[J]. JOURNAL OF PROTEOME RESEARCH, 2005, 4 (06) : 2126 - 2132An, YM论文数: 0 引用数: 0 h-index: 0机构: Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USAFu, ZM论文数: 0 引用数: 0 h-index: 0机构: Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USAGutierrez, P论文数: 0 引用数: 0 h-index: 0机构: Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USAFenselau, C论文数: 0 引用数: 0 h-index: 0机构: Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USA Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USA
- [2] Application of 16O/18O reverse proteolytic labeling to determine the effect of biofilm culture on the cell envelope proteome of Porphyromonas gingivalis W50[J]. PROTEOMICS, 2008, 8 (08) : 1645 - 1660Ang, Ching-Seng论文数: 0 引用数: 0 h-index: 0机构: Univ Melbourne, Sch Dent Sci, Ctr Oral Hlth Sci, Mol Sci & Biotechnol Inst Bio21, Melbourne, Vic, Australia Univ Melbourne, Sch Dent Sci, Ctr Oral Hlth Sci, Mol Sci & Biotechnol Inst Bio21, Melbourne, Vic, AustraliaVeith, Paul D.论文数: 0 引用数: 0 h-index: 0机构: Univ Melbourne, Sch Dent Sci, Ctr Oral Hlth Sci, Mol Sci & Biotechnol Inst Bio21, Melbourne, Vic, Australia Univ Melbourne, Sch Dent Sci, Ctr Oral Hlth Sci, Mol Sci & Biotechnol Inst Bio21, Melbourne, Vic, AustraliaDashper, Stuart G.论文数: 0 引用数: 0 h-index: 0机构: Univ Melbourne, Sch Dent Sci, Ctr Oral Hlth Sci, Mol Sci & Biotechnol Inst Bio21, Melbourne, Vic, Australia Univ Melbourne, Sch Dent Sci, Ctr Oral Hlth Sci, Mol Sci & Biotechnol Inst Bio21, Melbourne, Vic, AustraliaReynolds, Eric C.论文数: 0 引用数: 0 h-index: 0机构: Univ Melbourne, Sch Dent Sci, Ctr Oral Hlth Sci, Mol Sci & Biotechnol Inst Bio21, Melbourne, Vic, Australia Univ Melbourne, Sch Dent Sci, Ctr Oral Hlth Sci, Mol Sci & Biotechnol Inst Bio21, Melbourne, Vic, Australia
- [3] Trypsin is the primary mechanism by which the 18O isotopic label is lost in quantitative proteomic studies[J]. ANALYTICAL BIOCHEMISTRY, 2006, 359 (01) : 26 - 34Angel, Peggi M.论文数: 0 引用数: 0 h-index: 0机构: Univ Georgia, Complex Carbohydrate Res Ctr, Atlanta, GA 30302 USAOrlando, Ron论文数: 0 引用数: 0 h-index: 0机构: Univ Georgia, Complex Carbohydrate Res Ctr, Atlanta, GA 30302 USA
- [4] Identification of cross-linked peptides for protein interaction studies using mass spectrometry and 18O labeling[J]. ANALYTICAL CHEMISTRY, 2002, 74 (17) : 4417 - 4422Back, JW论文数: 0 引用数: 0 h-index: 0机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, NetherlandsNotenboom, V论文数: 0 引用数: 0 h-index: 0机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, Netherlandsde Koning, LJ论文数: 0 引用数: 0 h-index: 0机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, NetherlandsMuijsers, AO论文数: 0 引用数: 0 h-index: 0机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, NetherlandsSixma, TK论文数: 0 引用数: 0 h-index: 0机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, Netherlandsde Koster, CG论文数: 0 引用数: 0 h-index: 0机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, Netherlandsde Jong, LZ论文数: 0 引用数: 0 h-index: 0机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, Netherlands
- [5] Femtomol sensitivity post-digest 18O labeling for relative quantification of differential protein complex composition[J]. RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 2004, 18 (08) : 869 - 876Bantscheff, M论文数: 0 引用数: 0 h-index: 0机构: Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, GermanyDümpelfeld, B论文数: 0 引用数: 0 h-index: 0机构: Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, GermanyKuster, B论文数: 0 引用数: 0 h-index: 0机构: Cellzome AG, D-69117 Heidelberg, Germany Cellzome AG, D-69117 Heidelberg, Germany
- [6] A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS[J]. BIOINFORMATICS, 2006, 22 (15) : 1902 - 1909Bellew, Matthew论文数: 0 引用数: 0 h-index: 0机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USACoram, Marc论文数: 0 引用数: 0 h-index: 0机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USAFitzgibbon, Matthew论文数: 0 引用数: 0 h-index: 0机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA论文数: 引用数: h-index:机构:Randolph, Tim论文数: 0 引用数: 0 h-index: 0机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USAWang, Pei论文数: 0 引用数: 0 h-index: 0机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USAMay, Damon论文数: 0 引用数: 0 h-index: 0机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA论文数: 引用数: h-index:机构:Fang, Ruihua论文数: 0 引用数: 0 h-index: 0机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USALin, ChenWei论文数: 0 引用数: 0 h-index: 0机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USAChen, Jinzhi论文数: 0 引用数: 0 h-index: 0机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USAGoodlett, David论文数: 0 引用数: 0 h-index: 0机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USAWhiteaker, Jeffrey论文数: 0 引用数: 0 h-index: 0机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USAPaulovich, Amanda论文数: 0 引用数: 0 h-index: 0机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USAMcIntosh, Martin论文数: 0 引用数: 0 h-index: 0机构: Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA
- [7] Quantitative profiling of the detergent-resistant membrane proteome of Iota-b toxin induced Vero cells[J]. JOURNAL OF PROTEOME RESEARCH, 2005, 4 (02) : 523 - 531Blonder, J论文数: 0 引用数: 0 h-index: 0机构: NCI, Lab Proteom & Analyt Technol, SAIC Frederick, Frederick, MD 21702 USAHale, ML论文数: 0 引用数: 0 h-index: 0机构: NCI, Lab Proteom & Analyt Technol, SAIC Frederick, Frederick, MD 21702 USAChan, KC论文数: 0 引用数: 0 h-index: 0机构: NCI, Lab Proteom & Analyt Technol, SAIC Frederick, Frederick, MD 21702 USAYu, LR论文数: 0 引用数: 0 h-index: 0机构: NCI, Lab Proteom & Analyt Technol, SAIC Frederick, Frederick, MD 21702 USALucas, DA论文数: 0 引用数: 0 h-index: 0机构: NCI, Lab Proteom & Analyt Technol, SAIC Frederick, Frederick, MD 21702 USAConrads, TP论文数: 0 引用数: 0 h-index: 0机构: NCI, Lab Proteom & Analyt Technol, SAIC Frederick, Frederick, MD 21702 USAZhou, M论文数: 0 引用数: 0 h-index: 0机构: NCI, Lab Proteom & Analyt Technol, SAIC Frederick, Frederick, MD 21702 USAPopoff, MR论文数: 0 引用数: 0 h-index: 0机构: NCI, Lab Proteom & Analyt Technol, SAIC Frederick, Frederick, MD 21702 USAIssaq, HJ论文数: 0 引用数: 0 h-index: 0机构: NCI, Lab Proteom & Analyt Technol, SAIC Frederick, Frederick, MD 21702 USAStiles, BG论文数: 0 引用数: 0 h-index: 0机构: NCI, Lab Proteom & Analyt Technol, SAIC Frederick, Frederick, MD 21702 USAVeenstra, TD论文数: 0 引用数: 0 h-index: 0机构: NCI, Lab Proteom & Analyt Technol, SAIC Frederick, Frederick, MD 21702 USA
- [8] Quantitation of changes in protein phosphorylation: A simple method based on stable isotope labeling and mass spectrometry[J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (03) : 880 - 885Bonenfant, D论文数: 0 引用数: 0 h-index: 0机构: Univ Basel, Biozentrum, Dept Biochem, CH-4056 Basel, Switzerland Univ Basel, Biozentrum, Dept Biochem, CH-4056 Basel, SwitzerlandSchmelzle, T论文数: 0 引用数: 0 h-index: 0机构: Univ Basel, Biozentrum, Dept Biochem, CH-4056 Basel, Switzerland Univ Basel, Biozentrum, Dept Biochem, CH-4056 Basel, SwitzerlandJacinto, E论文数: 0 引用数: 0 h-index: 0机构: Univ Basel, Biozentrum, Dept Biochem, CH-4056 Basel, Switzerland Univ Basel, Biozentrum, Dept Biochem, CH-4056 Basel, Switzerland论文数: 引用数: h-index:机构:Mini, T论文数: 0 引用数: 0 h-index: 0机构: Univ Basel, Biozentrum, Dept Biochem, CH-4056 Basel, Switzerland Univ Basel, Biozentrum, Dept Biochem, CH-4056 Basel, SwitzerlandHall, MN论文数: 0 引用数: 0 h-index: 0机构: Univ Basel, Biozentrum, Dept Biochem, CH-4056 Basel, Switzerland Univ Basel, Biozentrum, Dept Biochem, CH-4056 Basel, SwitzerlandJenoe, P论文数: 0 引用数: 0 h-index: 0机构: Univ Basel, Biozentrum, Dept Biochem, CH-4056 Basel, Switzerland Univ Basel, Biozentrum, Dept Biochem, CH-4056 Basel, Switzerland
- [9] Investigation of doxorubicin resistance in MCF-7 breast cancer cells using shot-gun comparative proteomics with proteolytic 18O labeling[J]. JOURNAL OF PROTEOME RESEARCH, 2004, 3 (03) : 455 - 462Brown, KJ论文数: 0 引用数: 0 h-index: 0机构: Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USA Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USAFenselau, C论文数: 0 引用数: 0 h-index: 0机构: Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USA Univ Maryland, Dept Chem & Biochem, College Pk, MD 20742 USA
- [10] Quantitative proteomic analysis of the secretory proteins from rat adipose cells using a 2D liquid chromatography-MS/MS approach[J]. JOURNAL OF PROTEOME RESEARCH, 2005, 4 (02) : 570 - 577Chen, XL论文数: 0 引用数: 0 h-index: 0机构: NIDDK, Bioorgan Chem Lab, Dept Hlth & Human Serv,Diabetes Branch & Proteom, NIH,Expt Diabetes Metab & Nutr Sect, Bethesda, MD 20892 USA NIDDK, Bioorgan Chem Lab, Dept Hlth & Human Serv,Diabetes Branch & Proteom, NIH,Expt Diabetes Metab & Nutr Sect, Bethesda, MD 20892 USACushman, SW论文数: 0 引用数: 0 h-index: 0机构: NIDDK, Bioorgan Chem Lab, Dept Hlth & Human Serv,Diabetes Branch & Proteom, NIH,Expt Diabetes Metab & Nutr Sect, Bethesda, MD 20892 USA NIDDK, Bioorgan Chem Lab, Dept Hlth & Human Serv,Diabetes Branch & Proteom, NIH,Expt Diabetes Metab & Nutr Sect, Bethesda, MD 20892 USAPannell, LK论文数: 0 引用数: 0 h-index: 0机构: NIDDK, Bioorgan Chem Lab, Dept Hlth & Human Serv,Diabetes Branch & Proteom, NIH,Expt Diabetes Metab & Nutr Sect, Bethesda, MD 20892 USA NIDDK, Bioorgan Chem Lab, Dept Hlth & Human Serv,Diabetes Branch & Proteom, NIH,Expt Diabetes Metab & Nutr Sect, Bethesda, MD 20892 USAHess, S论文数: 0 引用数: 0 h-index: 0机构: NIDDK, Bioorgan Chem Lab, Dept Hlth & Human Serv,Diabetes Branch & Proteom, NIH,Expt Diabetes Metab & Nutr Sect, Bethesda, MD 20892 USA NIDDK, Bioorgan Chem Lab, Dept Hlth & Human Serv,Diabetes Branch & Proteom, NIH,Expt Diabetes Metab & Nutr Sect, Bethesda, MD 20892 USA