Genotype x environment interaction QTL mapping in plants: lessons from Arabidopsis

被引:188
作者
El-Soda, Mohamed [1 ,2 ]
Malosetti, Marcos [3 ]
Zwaan, Bas J. [1 ]
Koornneef, Maarten [1 ,4 ]
Aarts, Mark G. M. [1 ]
机构
[1] Wageningen Univ, Genet Lab, NL-6708 PB Wageningen, Netherlands
[2] Cairo Univ, Fac Agr, Dept Genet, Giza 12613, Egypt
[3] Wageningen Univ, NL-6708 PB Wageningen, Netherlands
[4] Max Planck Inst Plant Breeding Res, D-50829 Cologne, Germany
关键词
genotype x environment interaction; QTL x environment interaction; phenotypic plasticity; antagonistic pleiotropy; QUANTITATIVE TRAIT LOCI; GENOME-WIDE ASSOCIATION; ADAPTIVE PHENOTYPIC PLASTICITY; FLOWERING TIME; NATURAL VARIATION; MISSING HERITABILITY; COMPLEX TRAITS; EVOLUTIONARY CONSEQUENCES; ECOLOGICAL INTERACTIONS; GENETIC ARCHITECTURE;
D O I
10.1016/j.tplants.2014.01.001
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Plant growth and development are influenced by the genetic composition of the plant (G), the environment (E), and the interaction between them (G x E). To produce suitable genotypes for multiple environments, G x E should be accounted for and assessed in plant-breeding programs. Here, we review the genetic basis of G x E and its consequence for quantitative trait loci (QTL) mapping in biparental and genome-wide association (GWA) mapping populations. We also consider the implications of G x E for understanding plant fitness trade-offs and evolutionary ecology.
引用
收藏
页码:390 / 398
页数:9
相关论文
共 110 条
[1]   Ecology - Phenotypic plasticity in the interactions and evolution of species [J].
Agrawal, AA .
SCIENCE, 2001, 294 (5541) :321-326
[2]   On indirect genetic effects in structured populations [J].
Agrawal, AF ;
Brodie, ED ;
Wade, MJ .
AMERICAN NATURALIST, 2001, 158 (03) :308-323
[3]   Reciprocal transplants demonstrate strong adaptive differentiation of the model organism Arabidopsis thaliana in its native range [J].
Agren, Jon ;
Schemske, Douglas W. .
NEW PHYTOLOGIST, 2012, 194 (04) :1112-1122
[4]   Incremental steps toward incompatibility revealed by Arabidopsis epistatic interactions modulating salicylic acid pathway activation [J].
Alcazar, Ruben ;
Garcia, Ana V. ;
Parker, Jane E. ;
Reymond, Matthieu .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (01) :334-339
[5]   Genetic trade-offs and conditional neutrality contribute to local adaptation [J].
Anderson, Jill T. ;
Lee, Cheng-Ruei ;
Rushworth, Catherine A. ;
Colautti, Robert I. ;
Mitchell-Olds, Thomas .
MOLECULAR ECOLOGY, 2013, 22 (03) :699-708
[6]   Evolutionary genetics of plant adaptation [J].
Anderson, Jill T. ;
Willis, John H. ;
Mitchell-Olds, Thomas .
TRENDS IN GENETICS, 2011, 27 (07) :258-266
[7]   NATURAL VARIATION IN ABIOTIC STRESS AND CLIMATE CHANGE RESPONSES IN ARABIDOPSIS: IMPLICATIONS FOR TWENTY-FIRST-CENTURY AGRICULTURE [J].
Assmann, Sarah M. .
INTERNATIONAL JOURNAL OF PLANT SCIENCES, 2013, 174 (01) :3-26
[8]   Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines [J].
Atwell, Susanna ;
Huang, Yu S. ;
Vilhjalmsson, Bjarni J. ;
Willems, Glenda ;
Horton, Matthew ;
Li, Yan ;
Meng, Dazhe ;
Platt, Alexander ;
Tarone, Aaron M. ;
Hu, Tina T. ;
Jiang, Rong ;
Muliyati, N. Wayan ;
Zhang, Xu ;
Amer, Muhammad Ali ;
Baxter, Ivan ;
Brachi, Benjamin ;
Chory, Joanne ;
Dean, Caroline ;
Debieu, Marilyne ;
de Meaux, Juliette ;
Ecker, Joseph R. ;
Faure, Nathalie ;
Kniskern, Joel M. ;
Jones, Jonathan D. G. ;
Michael, Todd ;
Nemri, Adnane ;
Roux, Fabrice ;
Salt, David E. ;
Tang, Chunlao ;
Todesco, Marco ;
Traw, M. Brian ;
Weigel, Detlef ;
Marjoram, Paul ;
Borevitz, Justin O. ;
Bergelson, Joy ;
Nordborg, Magnus .
NATURE, 2010, 465 (7298) :627-631
[9]   Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana [J].
Bergelson, Joy ;
Roux, Fabrice .
NATURE REVIEWS GENETICS, 2010, 11 (12) :867-879
[10]   Molecular markers and selection for complex traits in plants: Learning from the last 20 years [J].
Bernardo, Rex .
CROP SCIENCE, 2008, 48 (05) :1649-1664