The complete chloroplast genome of Horsfieldia hainanensis, an Endangered species with extremely small populations

被引:1
作者
Yang, Yong [1 ]
Liu, Qiang [1 ]
Chen, Yu-Kai [1 ]
Wang, Yong [1 ]
Chen, Qing [2 ]
机构
[1] Hainan Normal Univ, Coll Life Sci, Minist Educ, Key Lab Ecol Trop Isl, Haikou 571158, Hainan, Peoples R China
[2] Bawangling Natl Nat Reserve, Changjiang, Hainan, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期
基金
美国国家科学基金会;
关键词
Horsfieldia hainanensis; Endangered plant; chloroplast genome; phylogenetic analysis;
D O I
10.1080/23802359.2019.1644556
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Horsfieldia hainanensis is an Endangered species with extremely small populations, inhabiting the dense forest in ravines. It has high development and utilization value in the seed oil, fatty acids, volatile oils, and liposoluble constituent. In this study, the complete chloroplast genome of Horsfieldia hainanensis was sequenced. It is 155,774 bp in size with a typical quadripartite structure: a large single-copy (LSC) region of 87,124 bp, a small single-copy (SSC) region of 20,612 bp, and 2 inverted repeat (IR) regions of 24,020 bp. The genome contains 117 genes, including 75 protein-coding genes, 34 tRNA genes, and 8 rRNA genes, 13 genes have one intron and 3 three genes have two introns. The overall GC contents of the chloroplast genome was 39.1%. The phylogenetic tree based 11 complete chloroplast genome sequences of Magnoliales shows that H. hainanensis is closely related to Horsfieldia pandurifolia.
引用
收藏
页码:2654 / 2655
页数:2
相关论文
共 11 条
  • [1] Quantification of the Pirimicarb Resistance Allele Frequency in Pooled Cotton Aphid (Aphis gossypii Glover) Samples by TaqMan SNP Genotyping Assay
    Chen, Yizhou
    Bogema, Daniel R.
    Barchia, Idris M.
    Herron, Grant A.
    [J]. PLOS ONE, 2014, 9 (03):
  • [2] Dang JL, 2009, CHIN MED MAT, V325, P714
  • [3] Doyle JJ., 1987, Phytochem Bull, V19, P11, DOI DOI 10.1016/0031-9422(80)85004-7
  • [4] Fu Xiao-Feng, 2018, Plant Science Journal, V36, P273, DOI 10.11913/PSJ.2095-0837.2018.20273
  • [5] Jiang YF, 2016, IEEE PHOTON CONF, P74, DOI 10.1109/IPCon.2016.7830985
  • [6] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
    Katoh, Kazutaka
    Standley, Daron M.
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780
  • [7] Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]
  • [8] [刘沙 Liu Sha], 2010, [计算机系统应用, Computer Systems & Applications], V19, P147
  • [9] SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
    Luo, Ruibang
    Liu, Binghang
    Xie, Yinlong
    Li, Zhenyu
    Huang, Weihua
    Yuan, Jianying
    He, Guangzhu
    Chen, Yanxiang
    Pan, Qi
    Liu, Yunjie
    Tang, Jingbo
    Wu, Gengxiong
    Zhang, Hao
    Shi, Yujian
    Liu, Yong
    Yu, Chang
    Wang, Bo
    Lu, Yao
    Han, Changlei
    Cheung, David W.
    Yiu, Siu-Ming
    Peng, Shaoliang
    Zhu Xiaoqian
    Liu, Guangming
    Liao, Xiangke
    Li, Yingrui
    Yang, Huanming
    Wang, Jian
    Lam, Tak-Wah
    Wang, Jun
    [J]. GIGASCIENCE, 2012, 1
  • [10] Automatic annotation of organellar genomes with DOGMA
    Wyman, SK
    Jansen, RK
    Boore, JL
    [J]. BIOINFORMATICS, 2004, 20 (17) : 3252 - 3255