Nonlinear elasticity of an α-helical polypeptide:: Monte Carlo studies

被引:21
作者
Chakrabarti, Buddhapriya [1 ]
Levine, Alex J.
机构
[1] Univ Massachusetts, Dept Phys, Amherst, MA 01003 USA
[2] Harvard Univ, Dept Phys, Cambridge, MA 02138 USA
[3] Univ Calif Los Angeles, Dept Chem & Biochem, Los Angeles, CA 90095 USA
[4] Univ Calif Los Angeles, Calif Nanosyst Inst, Los Angeles, CA 90095 USA
来源
PHYSICAL REVIEW E | 2006年 / 74卷 / 03期
关键词
D O I
10.1103/PhysRevE.74.031903
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
We report on Monte Carlo studies of the elastic properties of the helix-coil wormlike chain model of alpha-helical polypeptides. In this model the secondary structure enters as a scalar (Ising-like) variable that controls the local chain bending modulus. We characterize the nonlinear elastic properties of these molecules including their response to applied tensile forces and bending torques both individually and in combination. We find a pronounced effect of applied torque on the extensional compliance of the molecule and a similar effect of tension on the bending compliance. Finally we speculate that the strongly nonlinear response of alpha-helical polypeptides to combinations of torque and force plays a role in allosteric transitions in proteins.
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页数:11
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