The heat shock factor gene family in Salix suchowensis: a genome-wide survey and expression profiling during development and abiotic stresses

被引:44
作者
Zhang, Jin [1 ,2 ]
Li, Yu [1 ]
Jia, Hui-Xia [1 ,2 ]
Li, Jian-Bo [1 ]
Huang, Juan [1 ]
Lu, Meng-Zhu [1 ,2 ]
Hu, Jian-Jun [1 ,2 ]
机构
[1] Chinese Acad Forestry, Res Inst Forestry, State Key Lab Tree Genet & Breeding, Key Lab Tree Breeding & Cultivat,State Forestry A, Beijing 100091, Peoples R China
[2] Nanjing Forestry Univ, Coinnovat Ctr Sustainable Forestry Southern China, Nanjing, Jiangsu, Peoples R China
基金
中国博士后科学基金;
关键词
abiotic stresses; gene expression; gene family; Hsf; Salix suchowensis; transcription factor; TRANSCRIPTION FACTOR; ACTIVATOR FUNCTION; PLANT; ARABIDOPSIS; PROTEINS; HSFA2; THERMOTOLERANCE; IDENTIFICATION; DOMAINS; CASCADE;
D O I
10.3389/fpls.2015.00748
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Heat shock transcription factors (Hsfs), which act as important transcriptional regulatory proteins, play crucial roles in plant developmental processes, and stress responses. Recently, the genome of the shrub willow Salix suchowensis was fully sequenced. In this study, a total of 27 non-redundant Hsf genes were identified from the S. suchowensis genome. Phylogenetic analysis revealed that the members of the SsuHsf family can be divided into three groups (class A, B, and C) based on their structural characteristics. Promoter analysis indicated that the SsuHsfs promoters included various cis -acting elements related to hormone and/or stress responses. Furthermore, the expression profiles of 27 SsuHsfs were analyzed in different tissues and under various stresses (heat, drought, salt, and ABA treatment) using RT-PCR. The results demonstrated that the SsuHsfs were involved in abiotic stress responses. Our results contribute to a better understanding of the complexity of the SsuHsf gene family, and will facilitate functional characterization in future studies.
引用
收藏
页数:14
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共 43 条
[1]   Plant molecular stress responses face climate change [J].
Ahuja, Ishita ;
de Vos, Ric C. H. ;
Bones, Atle M. ;
Hall, Robert D. .
TRENDS IN PLANT SCIENCE, 2010, 15 (12) :664-674
[2]   A seed-specific heat-shock transcription factor involved in developmental regulation during embryogenesis in sunflower [J].
Almoguera, C ;
Rojas, A ;
Díaz-Martín, J ;
Prieto-Dapena, P ;
Carranco, R ;
Jordano, J .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (46) :43866-43872
[3]  
[Anonymous], NUCLEIC ACIDS RES
[4]   MEME SUITE: tools for motif discovery and searching [J].
Bailey, Timothy L. ;
Boden, Mikael ;
Buske, Fabian A. ;
Frith, Martin ;
Grant, Charles E. ;
Clementi, Luca ;
Ren, Jingyuan ;
Li, Wilfred W. ;
Noble, William S. .
NUCLEIC ACIDS RESEARCH, 2009, 37 :W202-W208
[5]  
Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkh121, 10.1093/nar/gkr1065]
[6]   Tomato heat stress transcription factor HsfB1 represents a novel type of general transcription coactivator with a histone-like motif interacting with the plant CREB binding protein ortholog HAC1 [J].
Bharti, K ;
von Koskull-Döring, P ;
Bharti, S ;
Kumar, P ;
Tintschl-Körbitzer, A ;
Treuter, E ;
Nover, L .
PLANT CELL, 2004, 16 (06) :1521-1535
[7]   MECHANISMS OF HEAT-SHOCK GENE ACTIVATION IN HIGHER EUKARYOTES [J].
BIENZ, M ;
PELHAM, HRB .
ADVANCES IN GENETICS INCORPORATING MOLECULAR GENETIC MEDICINE, 1987, 24 :31-72
[8]   Identification of novel heat shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana [J].
Busch, W ;
Wunderlich, M ;
Schöffl, F .
PLANT JOURNAL, 2005, 41 (01) :1-14
[9]   Repression by an auxin/indole acetic acid protein connects auxin signaling with heat shock factor-mediated seed longevity [J].
Carranco, Raul ;
Manuel Espinosa, Jose ;
Prieto-Dapena, Pilar ;
Almoguera, Concepcion ;
Jordano, Juan .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (50) :21908-21913
[10]   A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis [J].
Charng, Yee-yung ;
Liu, Hsiang-chin ;
Liu, Nai-yu ;
Chi, Wen-tzu ;
Wang, Chun-neng ;
Chang, Shih-hsun ;
Wang, Tsu-tsuen .
PLANT PHYSIOLOGY, 2007, 143 (01) :251-262