Bottom-up coarse-grained models that accurately describe the structure, pressure, and compressibility of molecular liquids

被引:92
作者
Dunn, Nicholas J. H. [1 ]
Noid, W. G. [1 ]
机构
[1] Penn State Univ, Dept Chem, University Pk, PA 16802 USA
关键词
STATISTICAL-MECHANICAL THEORY; DYNAMICS SIMULATIONS; THERMODYNAMIC CONSISTENCY; IRREVERSIBLE-PROCESSES; INTERACTION POTENTIALS; FORCE-FIELD; SCALE; ALGORITHMS; CHALLENGES; TRANSPORT;
D O I
10.1063/1.4937383
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The present work investigates the capability of bottom-up coarse-graining (CG) methods for accurately modeling both structural and thermodynamic properties of all-atom (AA) models for molecular liquids. In particular, we consider 1, 2, and 3-site CG models for heptane, as well as 1 and 3-site CG models for toluene. For each model, we employ the multiscale coarse-graining method to determine interaction potentials that optimally approximate the configuration dependence of the many-body potential of mean force (PMF). We employ a previously developed "pressure-matching" variational principle to determine a volume-dependent contribution to the potential, U-V(V), that approximates the volume-dependence of the PMF. We demonstrate that the resulting CG models describe AA density fluctuations with qualitative, but not quantitative, accuracy. Accordingly, we develop a self-consistent approach for further optimizing U-V, such that the CG models accurately reproduce the equilibrium density, compressibility, and average pressure of the AA models, although the CG models still significantly underestimate the atomic pressure fluctuations. Additionally, by comparing this array of models that accurately describe the structure and thermodynamic pressure of heptane and toluene at a range of different resolutions, we investigate the impact of bottom-up coarse-graining upon thermodynamic properties. In particular, we demonstrate that U-V accounts for the reduced cohesion in the CG models. Finally, we observe that bottom-up coarse-graining introduces subtle correlations between the resolution, the cohesive energy density, and the "simplicity" of the model. (C) 2015 AIP Publishing LLC.
引用
收藏
页数:16
相关论文
共 111 条
[1]   Coarse-grained interactions in polymer melts: A variational approach [J].
Akkermans, RLC ;
Briels, WJ .
JOURNAL OF CHEMICAL PHYSICS, 2001, 115 (13) :6210-6219
[2]   A structure-based coarse-grained model for polymer melts [J].
Akkermans, RLC ;
Briels, WJ .
JOURNAL OF CHEMICAL PHYSICS, 2001, 114 (02) :1020-1031
[3]   A novel algorithm for creating coarse-grained, density dependent implicit solvent models [J].
Allen, Erik C. ;
Rutledge, Gregory C. .
JOURNAL OF CHEMICAL PHYSICS, 2008, 128 (15)
[4]  
Allen M. P., 1998, CCP5 Quarterly, V31
[5]  
Andersen H.C., 1976, ADV CHEM PHYS, V34, P105, DOI DOI 10.1002/9780470142530.CH2
[6]   MOLECULAR-DYNAMICS SIMULATIONS AT CONSTANT PRESSURE AND-OR TEMPERATURE [J].
ANDERSEN, HC .
JOURNAL OF CHEMICAL PHYSICS, 1980, 72 (04) :2384-2393
[7]  
[Anonymous], ARXIV11034954V2CONDM
[8]   FORCE AND VIRIAL OF TORSIONAL-ANGLE-DEPENDENT POTENTIALS [J].
BEKKER, H ;
BERENDSEN, HJC ;
VANGUNSTEREN, WF .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1995, 16 (05) :527-533
[9]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[10]   Systematic coarse-graining methods for soft matter simulations - a review [J].
Brini, Emiliano ;
Algaer, Elena A. ;
Ganguly, Pritam ;
Li, Chunli ;
Rodriguez-Ropero, Francisco ;
van der Vegt, Nico F. A. .
SOFT MATTER, 2013, 9 (07) :2108-2119