Comparative genome-wide transcriptional analysis of human left and right internal mammary arteries

被引:12
|
作者
Ferrari, Giovanni [1 ,2 ]
Quackenbush, John [3 ]
Strobeck, John [1 ]
Hu, Lan [3 ]
Johnson, Christopher K. [1 ]
Mak, Andrew [1 ]
Shaw, Richard E. [1 ]
Sayles, Kathleen [1 ]
Brizzio, Mariano E. [1 ,4 ]
Zapolanski, Alex [1 ,4 ]
Grau, Juan B. [1 ,4 ]
机构
[1] Valley Columbia Heart Ctr, Ridgewood, NJ 07450 USA
[2] Univ Penn, Dept Surg, Glenolden, PA 19036 USA
[3] Dana Farber Canc Inst, Ctr Canc Computat Biol, Boston, MA 02215 USA
[4] Columbia Univ Coll Phys & Surg, Dept Surg, New York, NY 10032 USA
关键词
Cardiovascular disease; Transcriptome analysis; Genomics; Coronary artery bypass grafting; MIGRATION INHIBITORY FACTOR; MUSCLE-CELL PHENOTYPE; NF-KAPPA-B; THORACIC ARTERY; SMOOTH-MUSCLE; SAPHENOUS-VEIN; ANGIOGRAPHIC PREDICTORS; RECEPTOR EXPRESSION; SIGNALING PATHWAYS; GENE-EXPRESSION;
D O I
10.1016/j.ygeno.2014.04.005
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
In coronary artery bypass grafting (CABG), the combined use of left and right internal mammary arteries (LIMA and RIMA) - collectively known as bilateral IMAs (BIMAs) provides a survival advantage over the use of LIMA alone. However, gene expression in RIMA has never been compared to that in LIMA. Here we report a genome-wide transcriptional analysis of BIMA to investigate the expression profiles of these conduits in patients undergoing CABG. As expected, in comparing the BIMAs to the aorta, we found differences in pathways and processes associated with atherosclerosis, inflammation, and cell signaling - pathways which provide biological support for the observation that BIMA grafts deliver long-term benefits to the patients and protect against continued atherosclerosis. These data support the widespread use of BIMAs as the preferred conduits in CABG. (C) 2014 Elsevier Inc. All rights reserved.
引用
收藏
页码:36 / 44
页数:9
相关论文
共 50 条
  • [21] Comparative analysis of genome-wide DNA methylation in Neurospora
    Hosseini, Sara
    Meunier, Cecile
    Nguyen, Diem
    Reimegard, Johan
    Johannesson, Hanna
    EPIGENETICS, 2020, 15 (09) : 972 - 987
  • [22] Genome-wide Comparative Analysis of Annexin Superfamily in Plants
    Jami, Sravan Kumar
    Clark, Greg B.
    Ayele, Belay T.
    Ashe, Paula
    Kirti, Pulugurtha Bharadwaja
    PLOS ONE, 2012, 7 (11):
  • [23] Genome-Wide Analysis of Human Preimplantation Aneuploidy
    Treff, Nathan R.
    SEMINARS IN REPRODUCTIVE MEDICINE, 2012, 30 (04) : 283 - 288
  • [24] Comparative analysis of methods for genome-wide nucleosome cartography
    Quintales, Luis
    Vazquez, Enrique
    Antequera, Francisco
    BRIEFINGS IN BIOINFORMATICS, 2015, 16 (04) : 576 - 587
  • [25] Genome-wide discovery of modulators of transcriptional interactions in human B lymphocytes
    Wang, Kai
    Nemenman, Ilya
    Banerjee, Nilanjana
    Margolin, Adam A.
    Califano, Andrea
    RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, PROCEEDINGS, 2006, 3909 : 348 - 362
  • [26] Comparative genomics: Genome-wide analysis in metazoan eukaryotes
    Ureta-Vidal, A
    Ettwiller, L
    Birney, E
    NATURE REVIEWS GENETICS, 2003, 4 (04) : 251 - 262
  • [27] Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
    Ecker, Simone
    Chen, Lu
    Pancaldi, Vera
    Bagger, Frederik O.
    Maria Fernandez, Jose
    de Santa Pau, Enrique Carrillo
    Juan, David
    Mann, Alice L.
    Watt, Stephen
    Casale, Francesco Paolo
    Sidiropoulos, Nikos
    Rapin, Nicolas
    Merkel, Angelika
    Stunnenberg, Hendrik G.
    Stegle, Oliver
    Frontini, Mattia
    Downes, Kate
    Pastinen, Tomi
    Kuijpers, Taco W.
    Rico, Daniel
    Valencia, Alfonso
    Beck, Stephan
    Soranzo, Nicole
    Paul, Dirk S.
    GENOME BIOLOGY, 2017, 18
  • [28] Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
    Simone Ecker
    Lu Chen
    Vera Pancaldi
    Frederik O. Bagger
    José María Fernández
    Enrique Carrillo de Santa Pau
    David Juan
    Alice L. Mann
    Stephen Watt
    Francesco Paolo Casale
    Nikos Sidiropoulos
    Nicolas Rapin
    Angelika Merkel
    Hendrik G. Stunnenberg
    Oliver Stegle
    Mattia Frontini
    Kate Downes
    Tomi Pastinen
    Taco W. Kuijpers
    Daniel Rico
    Alfonso Valencia
    Stephan Beck
    Nicole Soranzo
    Dirk S. Paul
    Genome Biology, 18
  • [29] Comparative analysis of genome-wide DNA methylation identifies patterns that associate with conserved transcriptional programs in osteosarcoma
    Mills, Lauren J.
    Scott, Milcah C.
    Shah, Pankti
    Cunanan, Anne R.
    Deshpande, Archana
    Auch, Benjamin
    Curtin, Bridget
    Beckman, Kenneth B.
    Spector, Logan G.
    Sarver, Aaron L.
    Subramanian, Subbaya
    Richmond, Todd A.
    Modiano, Jaime F.
    BONE, 2022, 158
  • [30] Genome-wide post-transcriptional regulation of bovine mammary gland response to Streptococcus uberis
    Tabashiri, Raana
    Sharifi, Somayeh
    Pakdel, Abbas
    Bakhtiarizadeh, Mohammad Reza
    Pakdel, Mohammad Hosein
    Tahmasebi, Ahmad
    Hercus, Colin
    JOURNAL OF APPLIED GENETICS, 2022, 63 (04) : 771 - 782