ELMOD2 is a candidate gene for familial idiopathic pulmonary fibrosis

被引:80
作者
Hodgson, U
Pulkkinen, V
Dixon, M
Peyrard-Janvid, M
Rehn, M
Lahermo, P
Ollikainen, V
Salmenkivi, K
Kinnula, V
Kere, J
Tukiainen, P
Laitinen, T
机构
[1] Univ Helsinki, Cent Hosp, Dept Pulm Med, Helsinki 00029, Finland
[2] Univ Helsinki, Cent Hosp, HUSLAB, Helsinki 00029, Finland
[3] Univ Helsinki, Dept Med Genet, Helsinki 00029, Finland
[4] Univ Helsinki, Dept Comp Sci, Helsinki 00029, Finland
[5] Univ Helsinki, Dept Pathol, Helsinki 00029, Finland
[6] Univ Helsinki, Finnish Genome Ctr, Helsinki 00029, Finland
[7] GeneOS, Helsinki, Finland
[8] Karolinska Inst, Novum, Dept Biosci, Stockholm, Sweden
关键词
D O I
10.1086/504639
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
We performed a genomewide scan in six multiplex families with familial idiopathic pulmonary fibrosis ( IPF) who originated from southeastern Finland. The majority of the Finnish multiplex families were clustered in the region, and the population history suggested that the clustering might be explained by an ancestor shared among the patients. The genomewide scan identified five loci of interest. The hierarchical fine mapping in an extended data set with 24 families originating from the same geographic region revealed a shared 110 kb to 13 Mb haplotype on chromosome 4q31, which was significantly more frequent among the patients than in population-based controls ( odds ratio 6.3; 95% CI 2.5 - 15.9; P = .0001). The shared haplotype harbored two functionally uncharacterized genes, ELMOD2 and LOC152586, of which only ELMOD2 was expressed in lung and showed significantly decreased messenger-RNA expression in IPF lung ( n = 6) when compared with that of healthy lung ( n = 7; P = .05). Our results suggest ELMOD2 as a novel candidate gene for susceptibility in familial IPF.
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收藏
页码:149 / 154
页数:6
相关论文
共 25 条
[1]  
[Anonymous], 2002, AM J RESP CRIT CARE, V165, P277, DOI [DOI 10.1164/AJRCCM.165.2.ATS01, 10.1164/ajrccm.165.2.ats01]
[2]   FAMILIAL IDIOPATHIC PULMONARY FIBROSIS - EVIDENCE OF LUNG INFLAMMATION IN UNAFFECTED FAMILY MEMBERS [J].
BITTERMAN, PB ;
RENNARD, SI ;
KEOGH, BA ;
WEWERS, MD ;
ADELBERG, S ;
CRYSTAL, RG .
NEW ENGLAND JOURNAL OF MEDICINE, 1986, 314 (21) :1343-1347
[3]   Prognostic significance of histopathologic subsets in idiopathic pulmonary fibrosis [J].
Bjoraker, JA ;
Ryu, JH ;
Edwin, MK ;
Myers, JL ;
Tazelaar, HD ;
Schroeder, DR ;
Offord, KP .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 1998, 157 (01) :199-203
[4]  
Davies Huw R, 2002, Am J Respir Med, V1, P211
[5]   Nationwide prevalence of sporadic and familial idiopathic pulmonary fibrosis: evidence of founder effect among multiplex families in Finland [J].
Hodgson, U ;
Laitinen, T ;
Tukiainen, P .
THORAX, 2002, 57 (04) :338-342
[6]  
HOGLUND P, 1995, AM J HUM GENET, V57, P95
[7]   IDIOPATHIC PULMONARY FIBROSIS IN MONOZYGOTIC TWINS - THE IMPORTANCE OF GENETIC PREDISPOSITION [J].
JAVAHERI, S ;
LEDERER, DH ;
PELLA, JA ;
MARK, GJ ;
LEVINE, BW .
CHEST, 1980, 78 (04) :591-594
[8]   Associations between human disease genes and overlapping gene groups and multiple amino acid runs [J].
Karlin, S ;
Chen, CF ;
Gentles, AJ ;
Cleary, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (26) :17008-17013
[9]   Idiopathic pulmonary fibrosis - Clinical relevance of pathologic classification [J].
Katzenstein, ALA ;
Myers, JL .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 1998, 157 (04) :1301-1315
[10]   Human population genetics: Lessons from Finland [J].
Kere, J .
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, 2001, 2 :103-128