EMBL Nucleotide Sequence Database: developments in 2005

被引:62
作者
Cochrane, Guy [1 ]
Aldebert, Philippe [1 ]
Althorpe, Nicola [1 ]
Andersson, Mikael [1 ]
Baker, Wendy [1 ]
Baldwin, Alastair [1 ]
Bates, Kirsty [1 ]
Bhattacharyya, Sumit [1 ]
Browne, Paul [1 ]
van den Broek, Alexandra [1 ]
Castro, Matias [1 ]
Duggan, Karyn [1 ]
Eberhardt, Ruth [1 ]
Faruque, Nadeem [1 ]
Gamble, John [1 ]
Kanz, Carola [1 ]
Kulikova, Tamara [1 ]
Lee, Charles [1 ]
Leinonen, Rasko [1 ]
Lin, Quan [1 ]
Lombard, Vincent [1 ]
Lopez, Rodrigo [1 ]
McHale, Michelle [1 ]
McWilliam, Hamish [1 ]
Mukherjee, Gaurab [1 ]
Nardone, Francesco [1 ]
Pastor, Maria Pilar Garcia [1 ]
Sobhany, Siamak [1 ]
Stoehr, Peter [1 ]
Tzouvara, Katerina [1 ]
Vaughan, Robert [1 ]
Wu, Dan [1 ]
Zhu, Weimin [1 ]
Apweiler, Rolf [1 ]
机构
[1] European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
关键词
D O I
10.1093/nar/gkj130
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The EMBL Nucleotide Sequence Database (www.ebi.ac.uk/embl) at the EMBL European Bioinformatics Institute, UK, offers a comprehensive set of publicly available nucleotide sequence and annotation, freely accessible to all. Maintained in collaboration with partners DDBJ and GenBank, coverage includes whole genome sequencing project data, directly submitted sequence, sequence recorded in support of patent applications and much more. The database continues to offer submission tools, data retrieval facilities and user support. In 2005, the volume of data offered has continued to grow exponentially. In addition to the newly presented data, the database encompasses a range of new data types generated by novel technologies, offers enhanced presentation and searchability of the data and has greater integration with other data resources offered at the EBI and elsewhere. In stride with these developing data types, the database has continued to develop submission and retrieval tools to maximise the information content of submitted data and to offer the simplest possible submission routes for data producers. New developments, the submission process, data retrieval and access to support are presented in this paper, along with links to sources of further information.
引用
收藏
页码:D10 / D15
页数:6
相关论文
共 17 条
  • [11] The EMBL sequence version archive
    Leinonen, R
    Nardone, F
    Oyewole, O
    Redaschi, N
    Stoehr, P
    [J]. BIOINFORMATICS, 2003, 19 (14) : 1861 - 1862
  • [12] EMBL-Align: a new public nucleotide and amino acid multiple sequence alignment database
    Lombard, V
    Camon, EB
    Parkinson, HE
    Hingamp, P
    Stoesser, G
    Redaschi, N
    [J]. BIOINFORMATICS, 2002, 18 (05) : 763 - 764
  • [13] InterPro, progress and status in 2005
    Mulder, NJ
    Apweiler, R
    Attwood, TK
    Bairoch, A
    Bateman, A
    Binns, D
    Bradley, P
    Bork, P
    Bucher, P
    Cerutti, L
    Copley, R
    Courcelle, E
    Das, U
    Durbin, R
    Fleischmann, W
    Gough, J
    Haft, D
    Harte, N
    Hulo, N
    Kahn, D
    Kanapin, A
    Krestyaninova, M
    Lonsdale, D
    Lopez, R
    Letunic, I
    Madera, M
    Maslen, J
    McDowall, J
    Mitchell, A
    Nikolskaya, AN
    Orchard, S
    Pagni, M
    Pointing, CP
    Quevillon, E
    Selengut, J
    Sigrist, CJA
    Silventoinen, V
    Studholme, DJ
    Vaughan, R
    Wu, CH
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : D201 - D205
  • [14] DDBJ in preparation for overview of research activities behind data submissions
    Okubo, Kousaku
    Sugawara, Hideaki
    Gojobori, Takashi
    Tateno, Yoshio
    [J]. NUCLEIC ACIDS RESEARCH, 2006, 34 : D6 - D9
  • [15] High-throughput SELEX-SAGE method for quantitative modeling of transcription-factor binding sites
    Roulet, E
    Busso, S
    Camargo, AA
    Simpson, AJG
    Mermod, N
    Bucher, P
    [J]. NATURE BIOTECHNOLOGY, 2002, 20 (08) : 831 - 835
  • [16] Artemis: sequence visualization and annotation
    Rutherford, K
    Parkhill, J
    Crook, J
    Horsnell, T
    Rice, P
    Rajandream, MA
    Barrell, B
    [J]. BIOINFORMATICS, 2000, 16 (10) : 944 - 945
  • [17] The Universal Protein Resource (UniProt): an expanding universe of protein information
    Wu, Cathy H.
    Apweiler, Rolf
    Bairoch, Amos
    Natale, Darren A.
    Barker, Winona C.
    Boeckmann, Brigitte
    Ferro, Serenella
    Gasteiger, Elisabeth
    Huang, Hongzhan
    Lopez, Rodrigo
    Magrane, Michele
    Martin, Maria J.
    Mazumder, Raja
    O'Donovan, Claire
    Redaschi, Nicole
    Suzek, Baris
    [J]. NUCLEIC ACIDS RESEARCH, 2006, 34 : D187 - D191