Gene expression data clustering using a multiobjective symmetry based clustering technique

被引:27
作者
Saha, Sriparna [1 ]
Ekbal, Asif [1 ]
Gupta, Kshitija [1 ]
Bandyopadhyay, Sanghamitra [2 ]
机构
[1] Indian Inst Technol, Dept Comp Sci & Engn, Patna, Bihar, India
[2] Indian Stat Inst, Machine Intelligence Unit, Kolkata, India
关键词
Microarray data; Gene expression data clustering; Clustering; Multiobjective optimization (MOO); Symmetry; Archived multiobjective simulated annealing based technique (AMOSA); Automatic determination of number of clusters; STATISTICAL COMPARISONS; AUTOMATIC EVOLUTION; VALIDITY INDEX; OPTIMIZATION; ALGORITHM; PATTERNS; CLASSIFIERS; SYSTEM;
D O I
10.1016/j.compbiomed.2013.07.021
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The invention of microarrays has rapidly changed the state of biological and biomedical research. Clustering algorithms play an important role in clustering microarray data sets where identifying groups of co-expressed genes are a very difficult task. Here we have posed the problem of clustering the microarray data as a multiobjective clustering problem. A new symmetry based fuzzy clustering technique is developed to solve this problem. The effectiveness of the proposed technique is demonstrated on five publicly available benchmark data sets. Results are compared with some widely used microarray clustering techniques. Statistical and biological significance tests have also been carried out. (C) 2013 Elsevier Ltd. All rights reserved.
引用
收藏
页码:1965 / 1977
页数:13
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