New applications of the genetic algorithm for the interpretation of high-resolution spectra

被引:78
作者
Meerts, WL
Schmitt, M
Groenenboom, GC
机构
[1] Univ Nijmegen, Dept Mol & Laser Phys, NSRIM, NL-6500 GL Nijmegen, Netherlands
[2] Univ Dusseldorf, Inst Phys Chem, D-40225 Dusseldorf, Germany
[3] Univ Nijmegen, Inst Theoret Chem, NSRIM, NL-6500 GL Nijmegen, Netherlands
关键词
high-resolution spectroscopy; genetic algorithm; biomolecules; structure; van der Waals clusters;
D O I
10.1139/V04-037
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Rotationally resolved electronic spectroscopy yields a wealth of information on molecular structures in different electronic states. Unfortunately, for large molecules the spectra get rapidly very congested owing to close-lying vibronic bands, other isotopomers with similar zero-point energy shifts, or large-amplitude internal motions. A straightforward assignment of single rovibronic lines and, therefore, line position assigned fits are impossible. An alternative approach is unassigned fits of the spectra using genetic algorithms (GAs) with special cost functions for evaluation of the quality of the fit. This paper decribes the improvements we established on the GA method discussed before (J.A. Hageman, R. Wehrens, R. de Gelder, W.L. Meerts, and L.M.C. Buydens. J. Chem. Phys. 113, 7955 (2000)). In particular, we succeeded in obtaining a dramatic reduction in computing time that made it possible to apply the GA process in a large number of cases. A completely automated fit of a rotationally resolved laser-induced fluorescence spectrum without any prior knowledge of the molecular parameters can now be performed in less than 1 h. We demonstrate the power of the method on a number of typical examples such as very dense rovibronic spectra of van der Waals clusters and overlapping spectra due to different isotopomers. The discussed results demonstrate the extreme power of the GA in automated fitting and assigning of complex spectra. It opens the road to the analysis of complex spectra of biomolecules and their building blocks.
引用
收藏
页码:804 / 819
页数:16
相关论文
共 29 条
  • [1] ALLEN HC, 1963, MOL VIBROTORS
  • [2] [Anonymous], 1989, GENETIC ALGORITHM SE
  • [3] [Anonymous], 2001, An introduction to genetic algorithms
  • [4] On the additivity of bond dipole moments. Stark effect studies of the rotationally resolved electronic spectra of aniline, benzonitrile, and aminobenzonitrile
    Borst, DR
    Korter, TM
    Pratt, DW
    [J]. CHEMICAL PHYSICS LETTERS, 2001, 350 (5-6) : 485 - 490
  • [5] MICROWAVE-SPECTRUM AND AMINO HYDROGEN LOCATION IN INDOLE
    CAMINATI, W
    DIBERNARDO, S
    [J]. JOURNAL OF MOLECULAR STRUCTURE, 1990, 240 : 253 - 262
  • [6] THE ROTATIONAL SPECTRUM OF THE BENZONITRILE-ARGON VAN-DER-WAALS COMPLEX
    DAHMEN, U
    STAHL, W
    DREIZLER, H
    [J]. BERICHTE DER BUNSEN-GESELLSCHAFT-PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 1994, 98 (07): : 970 - 974
  • [7] Rotational band contour analysis in REMPI and ZEKE spectroscopy:: elucidating the structures of phenol•X (X=N2, CO and Ar) complexes
    Ford, MS
    Haines, SR
    Pugliesi, I
    Dessent, CEH
    Müller-Dethlefs, K
    [J]. JOURNAL OF ELECTRON SPECTROSCOPY AND RELATED PHENOMENA, 2000, 112 (1-3) : 231 - 239
  • [8] Gerstenkorn S., 1982, ATLAS SPECTRE ABSORP
  • [9] Gray F, 1953, US Patent no
  • [10] Direct determination of molecular constants from rovibronic spectra with genetic algorithms
    Hageman, JA
    Wehrens, R
    de Gelder, R
    Meerts, WL
    Buydens, LMC
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2000, 113 (18) : 7955 - 7962