Canibacter oris gen. nov., sp nov., isolated from an infected human wound

被引:3
作者
Aravena-Roman, M. [1 ]
Inglis, T. J. J. [1 ]
Siering, C. [2 ]
Schumann, P. [3 ]
Yassin, A. F. [4 ]
机构
[1] QEII Med Ctr, Bacteriol Lab, Dept Microbiol & Infect Dis, Lab Med Western Australia, Nedlands, WA 6009, Australia
[2] Johannes Gutenberg Univ Mainz, Inst Organ Chem, D-55128 Mainz, Germany
[3] Leibniz Inst DSMZ Deutsch Sammlung Mikroorganism, D-38124 Braunschweig, Germany
[4] Univ Bonn, Inst Med Mikrobiol & Immunol, D-53127 Bonn, Germany
关键词
PERFORMANCE LIQUID-CHROMATOGRAPHY; ACID; MICROBIOME; TREES;
D O I
10.1099/ijs.0.058859-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A facultatively anaerobic, Gram-reaction-positive, catalase- and oxidase-negative, rod-shaped bacterium isolated from an infected human wound caused by a dog bite was characterized by phenotypic and molecular genetic methods. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain IMMIB Q02020717(T) was a member of the order Micrococcales of the class Actinobacteria, displaying 91.6% to 96% sequence similarity with members of the family Microbacteriaceae. Phylogentic trees generated by different algorithms indicated that the strain forms an independent phylogenetic line of descent that consistently clustered proximal to the base of the genus Leucobacter. Chemical studies revealed the presence of a cell-wall murein based on L-lysine (type B1 alpha), major menaquinone (MK-10) and a DNA G+C content of 56.9 mol%. The distinct phylogenetic position, ribotyping and matrix-assisted laser desorption/ionization time-of-flight MS profiles and the significant phenotypic differences clearly separate strain IMMIB Q2029717(T) from its nearest phylogenetic neighbour and support its classification as a representative of a novel genus and species, with the suggested name Canibacter oris gen. nov., sp. nov. The type strain is IMMIB Q2029717(T) (=DSM 27064(T)=CCUG 64069(T)).
引用
收藏
页码:1635 / 1640
页数:6
相关论文
共 24 条
  • [1] Microbiology of Animal Bite Wound Infections
    Abrahamian, Fredrick M.
    Goldstein, Ellie J. C.
    [J]. CLINICAL MICROBIOLOGY REVIEWS, 2011, 24 (02) : 231 - 246
  • [2] BASIC LOCAL ALIGNMENT SEARCH TOOL
    ALTSCHUL, SF
    GISH, W
    MILLER, W
    MYERS, EW
    LIPMAN, DJ
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) : 403 - 410
  • [3] BAUER AW, 1966, AM J CLIN PATHOL, V45, P493
  • [4] Bruce J, 1996, FOOD TECHNOL-CHICAGO, V50, P77
  • [5] An observational study of the microbiome of the maternal pouch and saliva of the tammar wallaby, Macropus eugenii, and of the gastrointestinal tract of the pouch young
    Chhour, Kim-Ly
    Hinds, Lyn A.
    Jacques, Nicholas A.
    Deane, Elizabeth M.
    [J]. MICROBIOLOGY-SGM, 2010, 156 : 798 - 808
  • [6] Evtushenko L. I., 2012, Bergey's manual of systematic bacteriology, P807
  • [7] Leifsonia poae gen. nov., sp nov., isolated from nematode galls on Poa annua, and reclassification of 'Corynebacterium aquaticum' Leifson 1962 as Leifsonia aquatica (ex Leifson 1962) gen. nov., nom. rev., comb. nov and Clavibacter xyli Davis et al. 1984 with two subspecies as Leifsonia xyli (Davis et al. 1984) gen. nov., comb. nov.
    Evtushenko, LI
    Dorofeeva, LV
    Subbotin, SA
    Cole, JR
    Tiedje, JM
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2000, 50 : 371 - 380
  • [8] EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH
    FELSENSTEIN, J
    [J]. JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) : 368 - 376
  • [9] FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
  • [10] GORDON RUTH E., 1955, JOUR BACT, V69, P147