Editorial: Computational Epitranscriptomics: Bioinformatic Approaches for the Analysis of RNA Modifications

被引：0
作者：
Dassi, Erik [1 ]
Baranov, Pavel V. [2 ,3 ]
Pelizzola, Mattia [4 ]
机构：
[1] Univ Trento, Dept Cellular Computat & Integrat Biol CIBIO, Lab RNA Regulatory Networks, Trento, Italy
[2] Univ Coll Cork, Sch Biochem & Cell Biol, Cork, Ireland
[3] Russian Acad Sci, Shemyakin Ovchinnikov Inst Bioorgan Chem, Moscow, Russia
[4] Fdn Ist Italiano Tecnol, Ctr Genom Sci, Milan, Italy
来源：
FRONTIERS IN GENETICS | 2020年 / 11卷
关键词：
RNA modification; bioinformatics and computational biology; RNA methylation; RNA editing; pseudouridine (psi); nanopore;
D O I：
10.3389/fgene.2020.630360
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
引用
收藏
页数：2
相关论文
共 7 条
[1]   MODOMICS: a database of RNA modification pathways. 2017 update [J].
Boccaletto, Pietro ;
Machnicka, Magdalena A. ;
Purta, Elzbieta ;
Piatkowski, Pawe ;
Baginski, Blazej ;
Wirecki, Tomasz K. ;
de Crecy-Lagard, Valerie ;
Ross, Robert ;
Limbach, Patrick A. ;
Kotter, Annika ;
Helm, Mark ;
Bujnicki, Janusz M. .
NUCLEIC ACIDS RESEARCH, 2018, 46 (D1) :D303-D307
[2]   Computational epigenetics [J].
Bock, Christoph ;
Lengauer, Thomas .
BIOINFORMATICS, 2008, 24 (01) :1-10
[3]   Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq [J].
Dominissini, Dan ;
Moshitch-Moshkovitz, Sharon ;
Schwartz, Schraga ;
Salmon-Divon, Mali ;
Ungar, Lior ;
Osenberg, Sivan ;
Cesarkas, Karen ;
Jacob-Hirsch, Jasmine ;
Amariglio, Ninette ;
Kupiec, Martin ;
Sorek, Rotem ;
Rechavi, Gideon .
NATURE, 2012, 485 (7397) :201-U84
[4]   RNA modifications: what have we learned and where are we headed? [J].
Frye, Michaela ;
Jaffrey, Samie R. ;
Pan, Tao ;
Rechavi, Gideon ;
Suzuki, Tsutomu .
NATURE REVIEWS GENETICS, 2016, 17 (06) :365-372
[5]   Positioning Europe for the EPITRANSCRIPTOMICS challenge [J].
Jantsch, Michael F. ;
Quattrone, Alessandro ;
O'Connell, Mary ;
Helm, Mark ;
Frye, Michaela ;
Macias-Gonzales, Manuel ;
Ohman, Marie ;
Ameres, Stefan ;
Willems, Luc ;
Fuks, Francois ;
Oulas, Anastasis ;
Vanacova, Stepanka ;
Nielsen, Henrik ;
Bousquet-Antonelli, Cecile ;
Motorin, Yuri ;
Roignant, Jean-Yves ;
Balatsos, Nikolaos ;
Dinnyes, Andras ;
Baranov, Pavel ;
Kelly, Vincent ;
Lamm, Ayelet ;
Rechavi, Gideon ;
Pelizzola, Mattia ;
Liepins, Janis ;
Kholodnyuk, Irina Holodnuka ;
Zammit, Vanessa ;
Ayers, Duncan ;
Drablos, Finn ;
Dahl, John Arne ;
Bujnicki, Janusz ;
Jeronimo, Carmen ;
Almeida, Raquel ;
Neagu, Monica ;
Costache, Marieta ;
Bankovic, Jasna ;
Banovic, Bojana ;
Kyselovic, Jan ;
Valor, Luis Miguel ;
Selbert, Stefan ;
Pir, Pinar ;
Demircan, Turan ;
Cowling, Victoria ;
Schaefer, Matthias ;
Rossmanith, Walter ;
Lafontaine, Denis ;
David, Alexandre ;
Carre, Clement ;
Lyko, Frank ;
Schaffrath, Raffael ;
Schwartz, Schraga .
RNA BIOLOGY, 2018, 15 (06) :829-831
[6]   Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons [J].
Meyer, Kate D. ;
Saletore, Yogesh ;
Zumbo, Paul ;
Elemento, Olivier ;
Mason, Christopher E. ;
Jaffrey, Samie R. .
CELL, 2012, 149 (07) :1635-1646
[7]   Dynamic RNA Modifications in Gene Expression Regulation [J].
Roundtree, Ian A. ;
Evans, Molly E. ;
Pan, Tao ;
He, Chuan .
CELL, 2017, 169 (07) :1187-1200
1