Theoretical-computational modelling of the electric field effects on protein unfolding thermodynamics

被引:25
作者
Amadei, A. [1 ]
Marracino, P. [2 ]
机构
[1] Univ Roma Tor Vergata, Dipartimento Sci & Tecnol Chim, I-00031 Rome, Italy
[2] Univ Roma La Sapienza, Dipartimento Ingn Informaz Elettron & Telecomunic, I-00184 Rome, Italy
来源
RSC ADVANCES | 2015年 / 5卷 / 117期
关键词
IONIZATION MASS-SPECTROMETRY; GAUSSIAN ENTROPY THEORY; MOLECULAR-DYNAMICS; STATISTICAL-MECHANICS; THERMAL-DENATURATION; OLIGOMERIC PROTEINS; PRESSURE-DEPENDENCE; LIQUID WATER; MYOGLOBIN; TEMPERATURE;
D O I
10.1039/c5ra15605j
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
In this paper we present a general theoretical-computational approach to model the protein unfolding thermodynamics response to intense electric fields. The method proposed, based on atomistic simulations requiring limited computational effort, seems very promising to predict the unfolding thermodynamics field dependence, shedding light on the mechanisms involved. Application to myoglobin indicates a well defined field interval for a significant unfolding-refolding equilibrium with a melting field intensity ranging from 5.5 x 10(7) to 6.0 x 107 V m(-1) according to the protein-solvent system geometrical shape, suggesting a similar behaviour for other globular proteins.
引用
收藏
页码:96551 / 96561
页数:11
相关论文
共 66 条
[41]   Effect of High Exogenous Electric Pulses on Protein Conformation: Myoglobin as a Case Study [J].
Marracino, Paolo ;
Apollonio, Francesca ;
Liberti, Micaela ;
d'Inzeo, Guglielmo ;
Amadei, Andrea .
JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (08) :2273-2279
[42]   Modeling of Chemical Reactions in Micelle: Water-Mediated Keto-Enol Interconversion As a Case Study [J].
Marracino, Paolo ;
Amadei, Andrea ;
Apollonio, Francesca ;
d'Inzeo, Guglielmo ;
Liberti, Micaela ;
di Crescenzo, Antonello ;
Fontana, Antonella ;
Zappacosta, Romina ;
Aschi, Massimiliano .
JOURNAL OF PHYSICAL CHEMISTRY B, 2011, 115 (25) :8102-8111
[43]   Novel Passive Element Circuits for Microdosimetry of Nanosecond Pulsed Electric Fields [J].
Merla, Caterina ;
Denzi, Agnese ;
Paffi, Alessandra ;
Casciola, Maura ;
d'Inzeo, Guglielmo ;
Apollonio, Francesca ;
Liberti, Micaela .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 2012, 59 (08) :2302-2311
[44]   A 10-Ω High-Voltage Nanosecond Pulse Generator [J].
Merla, Caterina ;
El Amari, Saad ;
Kenaan, Mohamad ;
Liberti, Micaela ;
Apollonio, Francesca ;
Arnaud-Cormos, Delia ;
Couderc, Vincent ;
Leveque, Philippe .
IEEE TRANSACTIONS ON MICROWAVE THEORY AND TECHNIQUES, 2010, 58 (12) :4079-4085
[45]   Critical Temperature of Secondary Structural Change of Myoglobin in Thermal Denaturation up to 130 °C and Effect of Sodium Dodecyl Sulfate on the Change [J].
Moriyama, Yoshiko ;
Takeda, Kunio .
JOURNAL OF PHYSICAL CHEMISTRY B, 2010, 114 (07) :2430-2434
[46]   Protein hydration and unfolding - insights from experimental partial specific volumes and unfolded protein models [J].
Murphy, LR ;
Matubayasi, N ;
Payne, VA ;
Levy, RM .
FOLDING & DESIGN, 1998, 3 (02) :105-118
[47]  
Nenzi P., 2013, SMART FLEXIBLE PLANA, DOI [10.1109/ectc.2013.6575616, DOI 10.1109/ECTC.2013.6575616]
[48]   DETERMINING GLOBULAR PROTEIN STABILITY - GUANIDINE-HYDROCHLORIDE DENATURATION OF MYOGLOBIN [J].
PACE, CN ;
VANDERBURG, KE .
BIOCHEMISTRY, 1979, 18 (02) :288-292
[49]   Structural characterization of the pressure-denatured state and unfolding/refolding kinetics of staphylococcal nuclease by synchrotron small-angle X-ray scattering and Fourier-transform infrared spectroscopy [J].
Panick, G ;
Malessa, R ;
Winter, R ;
Rapp, G ;
Frye, KJ ;
Royer, CA .
JOURNAL OF MOLECULAR BIOLOGY, 1998, 275 (02) :389-402
[50]   Dipolar response and hydrogen-bond kinetics in liquid water in square-wave time-varying electric fields [J].
Reale, Riccardo ;
English, Niall J. ;
Marracino, Paolo ;
Liberti, Micaela ;
Apollonio, Francesca .
MOLECULAR PHYSICS, 2014, 112 (14) :1870-1878