Theoretical-computational modelling of the electric field effects on protein unfolding thermodynamics

被引:25
作者
Amadei, A. [1 ]
Marracino, P. [2 ]
机构
[1] Univ Roma Tor Vergata, Dipartimento Sci & Tecnol Chim, I-00031 Rome, Italy
[2] Univ Roma La Sapienza, Dipartimento Ingn Informaz Elettron & Telecomunic, I-00184 Rome, Italy
关键词
IONIZATION MASS-SPECTROMETRY; GAUSSIAN ENTROPY THEORY; MOLECULAR-DYNAMICS; STATISTICAL-MECHANICS; THERMAL-DENATURATION; OLIGOMERIC PROTEINS; PRESSURE-DEPENDENCE; LIQUID WATER; MYOGLOBIN; TEMPERATURE;
D O I
10.1039/c5ra15605j
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
In this paper we present a general theoretical-computational approach to model the protein unfolding thermodynamics response to intense electric fields. The method proposed, based on atomistic simulations requiring limited computational effort, seems very promising to predict the unfolding thermodynamics field dependence, shedding light on the mechanisms involved. Application to myoglobin indicates a well defined field interval for a significant unfolding-refolding equilibrium with a melting field intensity ranging from 5.5 x 10(7) to 6.0 x 107 V m(-1) according to the protein-solvent system geometrical shape, suggesting a similar behaviour for other globular proteins.
引用
收藏
页码:96551 / 96561
页数:11
相关论文
共 66 条
[21]   Statistical mechanics and thermodynamics of simulated ionic solutions [J].
D'Alessandro, M ;
D'Abramo, M ;
Brancato, G ;
Di Nola, A ;
Amadei, A .
JOURNAL OF PHYSICAL CHEMISTRY B, 2002, 106 (45) :11843-11848
[22]   PARTICLE MESH EWALD - AN N.LOG(N) METHOD FOR EWALD SUMS IN LARGE SYSTEMS [J].
DARDEN, T ;
YORK, D ;
PEDERSEN, L .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (12) :10089-10092
[23]   Increasing temperature accelerates protein unfolding without changing the pathway of unfolding [J].
Day, R ;
Bennion, BJ ;
Ham, S ;
Daggett, V .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 322 (01) :189-203
[24]   Equilibrium NMR studies of unfolded and partially folded proteins [J].
Dyson, HJ ;
Wright, PE .
NATURE STRUCTURAL BIOLOGY, 1998, 5 (Suppl 7) :499-503
[25]   Fast kinetics and mechanisms in protein folding [J].
Eaton, WA ;
Muñoz, V ;
Hagen, SJ ;
Jas, GS ;
Lapidus, LJ ;
Henry, ER ;
Hofrichter, J .
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 2000, 29 :327-359
[26]   An extended dynamical hydration shell around proteins [J].
Ebbinghaus, Simon ;
Kim, Seung Joong ;
Heyden, Matthias ;
Yu, Xin ;
Heugen, Udo ;
Gruebele, Martin ;
Leitner, David M. ;
Havenith, Martina .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (52) :20749-20752
[27]   Single molecule unfolding and stretching of protein domains inside a solid-state nanopore by electric field [J].
Freedman, Kevin J. ;
Haq, S. Raza ;
Edel, Joshua B. ;
Jemth, Per ;
Kim, Min Jun .
SCIENTIFIC REPORTS, 2013, 3
[28]  
Guggenheim E., 1977, THERMODYNAMICS
[29]   Structural study on acid-induced unfolding intermediates of myoglobin by using UV resonance Raman scattering from tryptophan residues [J].
Hashimoto, S ;
Fukasaka, J ;
Takeuchi, H .
JOURNAL OF RAMAN SPECTROSCOPY, 2001, 32 (6-7) :557-563
[30]  
Haug A., 1972, THEORETICAL SOLID ST