A family-level Tree of Life for bivalves based on a Sanger-sequencing approach

被引:115
作者
Combosch, David J. [1 ]
Collins, Timothy M. [2 ]
Glover, Emily A. [3 ]
Graf, Daniel L. [4 ]
Harper, Elizabeth M. [5 ]
Healy, John M. [6 ]
Kawauchi, Gisele Y. [1 ,7 ]
Lemer, Sarah [1 ]
McIntyre, Erin [1 ]
Strong, Ellen E. [8 ]
Taylor, John D. [3 ]
Zardus, John D.
Mikkelsen, Paula M. [9 ]
Giribet, Gonzalo [1 ,3 ]
Bielerj, Rudiger [9 ]
机构
[1] Harvard Univ, Dept Organism & Evolutionary Biol, Museum Comparat Zool, 26 Oxford St, Cambridge, MA 02138 USA
[2] Florida Int Univ, Dept Biol Sci, Miami, FL 33199 USA
[3] Nat Hist Museum, Dept Life Sci, Cromwell Rd, London SW7 5BD, England
[4] Univ Wisconsin, Dept Biol, 800 Reserve St, Stevens Point, WI 54481 USA
[5] Univ Cambridge, Dept Earth Sci, Downing St, Cambridge C82 3EQ, England
[6] Queensland Museum, POB 3300, South Brisbane, Qld 4101, Australia
[7] Univ Fed Minas Gerais, Dept Zool, Belo Horizonte, MG, Brazil
[8] Natl Museum Nat Hist, Smithsonian Inst, Dept Invertebrate Zool, POB 37012,MRC 163, Washington, DC 20013 USA
[9] Field Museum Nat Hist, Integrat Res Ctr, 1400 South Lake Shore Dr, Chicago, IL 60605 USA
基金
美国国家科学基金会;
关键词
Bivalvia; Sanger sequencing; Phylogenetics; Mollusca; Protobranchia; Pteriomorphia; MOLECULAR PHYLOGENETIC ANALYSIS; MOLLUSCA-BIVALVIA; FUNCTIONAL-MORPHOLOGY; ANOMALODESMATA; EVOLUTION; SUPPORTS; DEEP; CLASSIFICATION; PHYLOGENOMICS; HETERODONTA;
D O I
10.1016/j.ympev.2016.11.003
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The systematics of the molluscan class Bivalvia are explored using a 5-gene Sanger-based approach including the largest taxon sampling to date, encompassing 219 ingroup species spanning 93 (or 82%) of the 113 currently accepted bivalve families. This study was designed to populate the bivalve Tree of Life at the family level and to place many genera into a clear phylogenetic context, but also pointing to several major clades where taxonomic work is sorely needed. Despite not recovering monophyly of Bivalvia or Protobranchia-as in most previous Sanger-based approaches to bivalve phylogeny-our study provides increased resolution in many higher-level clades, and supports the monophyly of Autobranchia, Pteriomorphia, Heteroconchia, Palaeoheterodonta, Heterodonta, Archiheterodonta, Euheterodonta, Anomalodesmata, Imparidentia, and Neoheterodontei, in addition to many other lower clades. However, deep nodes within some of these clades, especially Pteriomorphia and Imparidentia, could not be resolved with confidence. In addition, many families are not supported, and several are supported as non-monophyletic, including Malletiidae, Nuculanidae, Yoldiidae, Malleidae, Pteriidae, Arcidae, Propeamussiidae, Iridinidae, Carditidae, Myochamidae, Lyonsiidae, Pandoridae, Montacutidae, Galeommatidae, Tellinidae, Semelidae, Psammobiidae, Donacidae, Mactridae, and Cyrenidae; Veneridae is paraphyletic with respect to Chamidae, although this result appears to be an artifact. The denser sampling however allowed testing specific placement of species, showing, for example, that the unusual Australian Plebidonax deltoides is not a member of Donacidae and instead nests within Psammobiidae, suggesting that major revision of Tellinoidea may be required. We also showed that Cleidothaerus is sister group to the cementing member of Myochamidae, suggesting that Cleidothaeridae may not be a valid family and that cementation in Cleidothaerus and Myochama may have had a single origin. These results highlight the need for an integrative approach including as many genera as possible, and that the monophyly and relationships of many families require detailed reassessment. NGS approaches may be able to resolve the most recalcitrant nodes in the near future. (C) 2016 Elsevier Inc. All rights reserved.
引用
收藏
页码:191 / 208
页数:18
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