Drivers of yeast community composition in the litter and soil of a temperate forest

被引:82
作者
Masinova, Tereza [1 ]
Bahnmann, Barbara Doreen [1 ]
Vetrovsky, Tomas [1 ]
Tomsovsky, Michal [2 ]
Merunkova, Kristina [3 ]
Baldrian, Petr [1 ]
机构
[1] CAS, Inst Microbiol, Lab Environm Microbiol, Videnska 1083, Prague 14220 4, Czech Republic
[2] Mendel Univ Brno, Fac Forestry & Wood Technol, Zemedelska 3, Brno 61300, Czech Republic
[3] Masaryk Univ, Dept Bot & Zool, Kotlarska 2, Brno 61137, Czech Republic
关键词
yeast ecology; soil microbiology; metagenomics; yeasts in soil; microbial ecology; forest; FUNGAL COMMUNITIES; PHYLOGENETIC CLASSIFICATION; TRICHOSPORON POROSUM; BIRCH FORESTS; IN-SITU; IDENTIFICATION; DIVERSITY; ECOLOGY; BACTERIAL; GRADIENT;
D O I
10.1093/femsec/fiw223
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Fungi represent a group of soil microorganisms fulfilling important ecological functions. Although several studies have shown that yeasts represent a significant proportion of fungal communities, our current knowledge is based mainly on cultivation experiments. In this study, we used amplicon sequencing of environmental DNA to describe the composition of yeast communities in European temperate forest and to identify the potential biotic and abiotic drivers of community assembly. Based on the analysis of ITS2 PCR amplicons, yeasts represented a substantial proportion of fungal communities ranging from 0.4 to 14.3% of fungal sequences in soil and 0.2 to 9.9% in litter. The species richness at individual sites was 28 +/- 9 in soil and 31 +/- 11 in litter. The basidiomycetous yeasts dominated over ascomycetous ones. In litter, yeast communities differed significantly among beech-,oak- and spruce-dominated stands. Drivers of community assembly are probably more complex in soils and comprise the effects of environmental conditions and vegetation.
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页数:10
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共 59 条
[1]   Plant growth promoting characteristics of soil yeast (Candida tropicalis HY) and its effectiveness for promoting rice growth [J].
Amprayn, Khanok-on ;
Rose, Michael T. ;
Kecskes, Mihaly ;
Pereg, Lily ;
Hien Thanh Nguyen ;
Kennedy, Ivan R. .
APPLIED SOIL ECOLOGY, 2012, 61 :295-299
[2]  
Aronesty E., 2013, Open Bioinforma J, V7, P1, DOI DOI 10.2174/1875036201307010001
[3]   Active and total microbial communities in forest soil are largely different and highly stratified during decomposition [J].
Baldrian, Petr ;
Kolarik, Miroslav ;
Stursova, Martina ;
Kopecky, Jan ;
Valaskova, Vendula ;
Vetrovsky, Tomaas ;
Zifcakova, Lucia ;
Snajdr, Jaroslav ;
Ridl, Jakub ;
Vlcek, Cestmir ;
Voriskova, Jana .
ISME JOURNAL, 2012, 6 (02) :248-258
[4]   General Relationships between Abiotic Soil Properties and Soil Biota across Spatial Scales and Different Land-Use Types [J].
Birkhofer, Klaus ;
Schoening, Ingo ;
Alt, Fabian ;
Herold, Nadine ;
Klarner, Bernhard ;
Maraun, Mark ;
Marhan, Sven ;
Oelmann, Yvonne ;
Wubet, Tesfaye ;
Yurkov, Andrey ;
Begerow, Dominik ;
Berner, Doreen ;
Buscot, Francois ;
Daniel, Rolf ;
Diekoetter, Tim ;
Ehnes, Roswitha B. ;
Erdmann, Georgia ;
Fischer, Christiane ;
Foesel, Baerbel ;
Groh, Janine ;
Gutknecht, Jessica ;
Kandeler, Ellen ;
Lang, Christa ;
Lohaus, Gertrud ;
Meyer, Annabel ;
Nacke, Heiko ;
Naether, Astrid ;
Overmann, Joerg ;
Polle, Andrea ;
Pollierer, Melanie M. ;
Scheu, Stefan ;
Schloter, Michael ;
Schulze, Ernst-Detlef ;
Schulze, Waltraud ;
Weinert, Jan ;
Weisser, Wolfgang W. ;
Wolters, Volkmar ;
Schrumpf, Marion .
PLOS ONE, 2012, 7 (08)
[5]   The importance and ecology of yeasts in soil [J].
Botha, Alfred .
SOIL BIOLOGY & BIOCHEMISTRY, 2011, 43 (01) :1-8
[6]   454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity [J].
Buee, M. ;
Reich, M. ;
Murat, C. ;
Morin, E. ;
Nilsson, R. H. ;
Uroz, S. ;
Martin, F. .
NEW PHYTOLOGIST, 2009, 184 (02) :449-456
[7]   Basidiomycete mycelia in forest soils: dimensions, dynamics and roles in nutrient distribution [J].
Cairney, JWG .
MYCOLOGICAL RESEARCH, 2005, 109 :7-20
[8]   Ecology of cultivable yeasts in pristine forests in northern Patagonia (Argentina) influenced by different environmental factors [J].
Cecilia Mestre, Maria ;
Fontenla, Sonia ;
Rosa, Carlos A. .
CANADIAN JOURNAL OF MICROBIOLOGY, 2014, 60 (06) :371-382
[9]   Evidence of Symbiosis Between the Soil Yeast Cryptococcus laurentii and a Sclerophyllous Medicinal Shrub, Agathosma betulina (Berg.) Pillans [J].
Cloete, Karen J. ;
Valentine, Alexander J. ;
Stander, Marietjie A. ;
Blomerus, Louisa M. ;
Botha, Alfred .
MICROBIAL ECOLOGY, 2009, 57 (04) :624-632
[10]   Associations between species and groups of sites: indices and statistical inference [J].
De Caceres, Miquel ;
Legendre, Pierre .
ECOLOGY, 2009, 90 (12) :3566-3574