Microbial community structure and its functional implications

被引:1064
作者
Fuhrman, Jed A. [1 ]
机构
[1] Univ So Calif, Dept Biol Sci, Los Angeles, CA 90089 USA
基金
美国国家科学基金会;
关键词
BACTERIAL DIVERSITY; NORTHWEST ATLANTIC; BIOMASS PRODUCTION; MARINE VIRUSES; PATTERNS; OCEAN; BIOGEOGRAPHY; SEA; MICRODIVERSITY; MICROORGANISMS;
D O I
10.1038/nature08058
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Marine microbial communities are engines of globally important processes, such as the marine carbon, nitrogen and sulphur cycles. Recent data on the structures of these communities show that they adhere to universal biological rules. Co-occurrence patterns can help define species identities, and systems-biology tools are revealing networks of interacting microorganisms. Some microbial systems are found to change predictably, helping us to anticipate how microbial communities and their activities will shift in a changing world.
引用
收藏
页码:193 / 199
页数:7
相关论文
共 80 条
[61]   LATITUDINAL GRADIENTS IN SPECIES DIVERSITY - A REVIEW OF CONCEPTS [J].
PIANKA, ER .
AMERICAN NATURALIST, 1966, 100 (910) :33-&
[62]   Global patterns of diversity and community structure in marine bacterioplankton [J].
Pommier, T. ;
Canback, B. ;
Riemann, L. ;
Bostrom, K. H. ;
Simu, K. ;
Lundberg, P. ;
Tunlid, A. ;
Hagstrom, A. .
MOLECULAR ECOLOGY, 2007, 16 (04) :867-880
[63]   Essay - The role of ecological theory in microbial ecology [J].
Prosser, James I. ;
Bohannan, Brendan J. M. ;
Curtis, Tom P. ;
Ellis, Richard J. ;
Firestone, Mary K. ;
Freckleton, Rob P. ;
Green, Jessica L. ;
Green, Laura E. ;
Killham, Ken ;
Lennon, Jack J. ;
Osborn, A. Mark ;
Solan, Martin ;
van der Gast, Christopher J. ;
Young, J. Peter W. .
NATURE REVIEWS MICROBIOLOGY, 2007, 5 (05) :384-392
[64]   The rational exploration of microbial diversity [J].
Quince, Christopher ;
Curtis, Thomas P. ;
Sloan, William T. .
ISME JOURNAL, 2008, 2 (10) :997-1006
[65]   Multivariate analyses in microbial ecology [J].
Ramette, Alban .
FEMS MICROBIOLOGY ECOLOGY, 2007, 62 (02) :142-160
[66]   Biogeography: An emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution [J].
Ramette, Alban ;
Tiedje, James M. .
MICROBIAL ECOLOGY, 2007, 53 (02) :197-207
[67]  
Rosenweig ML, 1995, SPECIES DIVERSITY SP
[68]   Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors [J].
Ruan, Quansong ;
Dutta, Debojyoti ;
Schwalbach, Michael S. ;
Steele, Joshua A. ;
Fuhrman, Jed A. ;
Sun, Fengzhu .
BIOINFORMATICS, 2006, 22 (20) :2532-2538
[69]   The Sorcerer II Global Ocean Sampling expedition:: Northwest Atlantic through Eastern Tropical Pacific [J].
Rusch, Douglas B. ;
Halpern, Aaron L. ;
Sutton, Granger ;
Heidelberg, Karla B. ;
Williamson, Shannon ;
Yooseph, Shibu ;
Wu, Dongying ;
Eisen, Jonathan A. ;
Hoffman, Jeff M. ;
Remington, Karin ;
Beeson, Karen ;
Tran, Bao ;
Smith, Hamilton ;
Baden-Tillson, Holly ;
Stewart, Clare ;
Thorpe, Joyce ;
Freeman, Jason ;
Andrews-Pfannkoch, Cynthia ;
Venter, Joseph E. ;
Li, Kelvin ;
Kravitz, Saul ;
Heidelberg, John F. ;
Utterback, Terry ;
Rogers, Yu-Hui ;
Falcon, Luisa I. ;
Souza, Valeria ;
Bonilla-Rosso, German ;
Eguiarte, Luis E. ;
Karl, David M. ;
Sathyendranath, Shubha ;
Platt, Trevor ;
Bermingham, Eldredge ;
Gallardo, Victor ;
Tamayo-Castillo, Giselle ;
Ferrari, Michael R. ;
Strausberg, Robert L. ;
Nealson, Kenneth ;
Friedman, Robert ;
Frazier, Marvin ;
Venter, J. Craig .
PLOS BIOLOGY, 2007, 5 (03) :398-431
[70]   Microbial diversity in the deep sea and the underexplored "rare biosphere" [J].
Sogin, Mitchell L. ;
Morrison, Hilary G. ;
Huber, Julie A. ;
Mark Welch, David ;
Huse, Susan M. ;
Neal, Phillip R. ;
Arrieta, Jesus M. ;
Herndl, Gerhard J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (32) :12115-12120