Highly parallel SNP genotyping

被引:473
作者
Fan, JB [1 ]
Oliphant, A
Shen, R
Kermani, BG
Garcia, F
Gunderson, KL
Hansen, M
Steemers, F
Butler, SL
Deloukas, P
Galver, L
Hunt, S
McBride, C
Bibikova, M
Rubano, T
Chen, J
Wickham, E
Doucet, D
Chang, W
Campbell, D
Zhang, B
Kruglyak, S
Bentley, D
Haas, J
Rigault, P
Zhou, L
Stuelpnagel, J
Chee, MS
机构
[1] Ilumina Inc, San Diego, CA 92121 USA
[2] Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England
关键词
D O I
10.1101/sqb.2003.68.69
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
引用
收藏
页码:69 / 78
页数:10
相关论文
共 29 条
[1]   DETECTION OF POINT MUTATIONS WITH A MODIFIED LIGASE CHAIN-REACTION (GAP-LCR) [J].
ABRAVAYA, K ;
CARRINO, JJ ;
MULDOON, S ;
LEE, HH .
NUCLEIC ACIDS RESEARCH, 1995, 23 (04) :675-682
[2]   Self-assembled random arrays: High-performance imaging and genomics applications on a high-density microarray platform [J].
Barker, DL ;
Theriault, G ;
Che, DP ;
Dickinson, T ;
Shen, R ;
Kain, R .
MICROARRAYS AND COMBINATORIAL TECHNOLOGIES FOR BIOMEDICAL APPLICATIONS: DESIGN, FABRICATION, AND ANALYSIS, 2003, 4966 :1-11
[3]   Flow cytometry-based minisequencing: A new platform for high-throughput single-nucleotide polymorphism scoring [J].
Cai, H ;
White, PS ;
Torney, D ;
Deshpande, A ;
Wang, ZL ;
Marrone, B ;
Nolan, JP .
GENOMICS, 2000, 66 (02) :135-143
[4]   A microsphere-based assay for multiplexed single nucleotide polymorphism analysis using single base chain extension [J].
Chen, JW ;
Iannone, MA ;
Li, MS ;
Taylor, JD ;
Rivers, P ;
Nelsen, AJ ;
Slentz-Kesler, KA ;
Roses, A ;
Weiner, MP .
GENOME RESEARCH, 2000, 10 (04) :549-557
[5]   A first-generation linkage disequilibrium map of human chromosome 22 [J].
Dawson, E ;
Abecasis, GR ;
Bumpstead, S ;
Chen, Y ;
Hunt, S ;
Beare, DM ;
Pabial, J ;
Dibling, T ;
Tinsley, E ;
Kirby, S ;
Carter, D ;
Papaspyridonos, M ;
Livingstone, S ;
Ganske, R ;
Lohmmussaar, E ;
Zernant, J ;
Tonisson, N ;
Remm, M ;
Mägi, R ;
Puurand, T ;
Vilo, J ;
Kurg, A ;
Rice, K ;
Deloukas, P ;
Mott, R ;
Metspalu, A ;
Bentley, DR ;
Cardon, LR ;
Dunham, I .
NATURE, 2002, 418 (6897) :544-548
[6]   Parallel genotyping of human SNPs using generic high-density oligonucleotide tag arrays [J].
Fan, JB ;
Chen, XQ ;
Halushka, MK ;
Berno, A ;
Huang, XH ;
Ryder, T ;
Lipshutz, RJ ;
Lockhart, DJ ;
Chakravarti, A .
GENOME RESEARCH, 2000, 10 (06) :853-860
[7]   The structure of haplotype blocks in the human genome [J].
Gabriel, SB ;
Schaffner, SF ;
Nguyen, H ;
Moore, JM ;
Roy, J ;
Blumenstiel, B ;
Higgins, J ;
DeFelice, M ;
Lochner, A ;
Faggart, M ;
Liu-Cordero, SN ;
Rotimi, C ;
Adeyemo, A ;
Cooper, R ;
Ward, R ;
Lander, ES ;
Daly, MJ ;
Altshuler, D .
SCIENCE, 2002, 296 (5576) :2225-2229
[8]   Universal DNA microarray method for multiplex detection of low abundance point mutations [J].
Gerry, NP ;
Witowski, NE ;
Day, J ;
Hammer, RP ;
Barany, G ;
Barany, F .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 292 (02) :251-262
[9]  
GUNDERSON KL, 2004, IN PRESS GENOME RES
[10]   Multiplexed genotyping with sequence-tagged molecular inversion probes [J].
Hardenbol, P ;
Banér, J ;
Jain, M ;
Nilsson, M ;
Namsaraev, EA ;
Karlin-Neumann, GA ;
Fakhrai-Rad, H ;
Ronaghi, M ;
Willis, TD ;
Landegren, U ;
Davis, RW .
NATURE BIOTECHNOLOGY, 2003, 21 (06) :673-678