Event- and Time-Driven Techniques Using Parallel CPU-GPU Co-processing for Spiking Neural Networks

被引:22
作者
Naveros, Francisco [1 ]
Garrido, Jesus A. [1 ]
Carrillo, Richard R. [1 ]
Ros, Eduardo [1 ]
Luque, Niceto R. [2 ,3 ]
机构
[1] Univ Granada, Res Ctr Informat & Commun Technol, Dept Comp Architecture & Technol, Granada, Spain
[2] Vis Inst, Aging Vis & Act Lab, Paris, France
[3] Univ Paris 06, CNRS, INSERM, Paris, France
关键词
event- and time-driven techniques; CPU; GPU; look-up table; spiking neural models; bi-fixed-step integration methods; MANIPULATION TASK; MODEL ABSTRACTION; SIMULATION; PLASTICITY; NEURONS; SYNCHRONIZATION;
D O I
10.3389/fninf.2017.00007
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Modeling and simulating the neural structures which make up our central neural system is instrumental for deciphering the computational neural cues beneath. Higher levels of biological plausibility usually impose higher levels of complexity in mathematical modeling, from neural to behavioral levels. This paper focuses on overcoming the simulation problems (accuracy and performance) derived from using higher levels of mathematical complexity at a neural level. This study proposes different techniques for simulating neural models that hold incremental levels of mathematical complexity: leaky integrate-and-fire (LIF), adaptive exponential integrate-and-fire (AdEx), and Hodgkin-Huxley (HH) neural models (ranged from low to high neural complexity). The studied techniques are classified into two main families depending on how the neural-model dynamic evaluation is computed: the event-driven or the time-driven families. Whilst event-driven techniques pre-compile and store the neural dynamics within look-up tables, time-driven techniques compute the neural dynamics iteratively during the simulation time. We propose two modifications for the event-driven family: a look-up table recombination to better cope with the incremental neural complexity together with a better handling of the synchronous input activity. Regarding the time-driven family, we propose a modification in computing the neural dynamics: the bi-fixed-step integration method. This method automatically adjusts the simulation step size to better cope with the stiffness of the neural model dynamics running in CPU platforms. One version of this method is also implemented for hybrid CPU-GPU platforms. Finally, we analyze how the performance and accuracy of these modifications evolve with increasing levels of neural complexity. We also demonstrate how the proposed modifications which constitute the main contribution of this study systematically outperform the traditional event-and time-driven techniques under increasing levels of neural complexity.
引用
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页数:22
相关论文
共 48 条
[1]   Hardware event-driven simulation engine for spiking neural networks [J].
Agis, R. ;
Ros, E. ;
Diaz, J. ;
Carrillo, R. ;
Ortigosa, E. M. .
INTERNATIONAL JOURNAL OF ELECTRONICS, 2007, 94 (05) :469-480
[2]  
[Anonymous], 2009, A first course in the numerical analysis of differential equations
[3]  
[Anonymous], 2002, SPIKING NEURON MODEL
[4]   Spiking Neural Network With Distributed Plasticity Reproduces Cerebellar Learning in Eye Blink Conditioning Paradigms [J].
Antonietti, Alberto ;
Casellato, Claudia ;
Garrido, Jesus A. ;
Luque, Niceto R. ;
Naveros, Francisco ;
Ros, Eduardo ;
D'Angelo, Egidio ;
Pedrocchi, Alessandra .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 2016, 63 (01) :210-219
[5]   Encoding/decoding of first and second order tactile afferents in a neurorobotic application [J].
Bologna, Luca Leonardo ;
Pinoteau, Jeremie ;
Brasselet, Romain ;
Maggiali, Marco ;
Arleo, Angelo .
JOURNAL OF PHYSIOLOGY-PARIS, 2011, 105 (1-3) :25-35
[6]   Adaptive exponential integrate-and-fire model as an effective description of neuronal activity [J].
Brette, R ;
Gerstner, W .
JOURNAL OF NEUROPHYSIOLOGY, 2005, 94 (05) :3637-3642
[7]   Simulation of networks of spiking neurons:: A review of tools and strategies [J].
Brette, Romain ;
Rudolph, Michelle ;
Carnevale, Ted ;
Hines, Michael ;
Beeman, David ;
Bower, James M. ;
Diesmann, Markus ;
Morrison, Abigail ;
Goodman, Philip H. ;
Harris, Frederick C., Jr. ;
Zirpe, Milind ;
Natschlaeger, Thomas ;
Pecevski, Dejan ;
Ermentrout, Bard ;
Djurfeldt, Mikael ;
Lansner, Anders ;
Rochel, Olivier ;
Vieville, Thierry ;
Muller, Eilif ;
Davison, Andrew P. ;
El Boustani, Sami ;
Destexhe, Alain .
JOURNAL OF COMPUTATIONAL NEUROSCIENCE, 2007, 23 (03) :349-398
[8]   A real-time spiking cerebellum model for learning robot control [J].
Carrillo, Richard R. ;
Ros, Eduardo ;
Boucheny, Christian ;
Coenen, Olivier J. -M. D. .
BIOSYSTEMS, 2008, 94 (1-2) :18-27
[9]   Adaptive Robotic Control Driven by a Versatile Spiking Cerebellar Network [J].
Casellato, Claudia ;
Antonietti, Alberto ;
Garrido, Jesus A. ;
Carrillo, Richard R. ;
Luque, Niceto R. ;
Ros, Eduardo ;
Pedrocchi, Alessandra ;
D'Angelo, Egidio .
PLOS ONE, 2014, 9 (11)
[10]   Modeling the Cerebellar Microcircuit: New Strategies for a Long Standing Issue [J].
D'Angelo, Egidio ;
Antonietti, Alberto ;
Casali, Stefano ;
Casellato, Claudia ;
Garrido, Jesus A. ;
Luque, Niceto Rafael ;
Mapelli, Lisa ;
Masoli, Stefano ;
Pedrocchi, Alessandra ;
Prestori, Francesca ;
Rizza, Martina Francesca ;
Ros, Eduardo .
FRONTIERS IN CELLULAR NEUROSCIENCE, 2016, 10