Deep learning reconstruction for cardiac magnetic resonance fingerprinting T1 and T2 mapping

被引:40
作者
Hamilton, Jesse I. [1 ]
Currey, Danielle [2 ]
Rajagopalan, Sanjay [3 ,4 ]
Seiberlich, Nicole [1 ]
机构
[1] Univ Michigan, Dept Radiol, MSRB 2 Room 1590,1150 West Med Ctr Dr, Ann Arbor, MI 48109 USA
[2] Johns Hopkins Univ, Dept Comp Sci, Baltimore, MD 21218 USA
[3] Univ Hosp Cleveland, Dept Radiol, Med Ctr, 2074 Abington Rd, Cleveland, OH 44106 USA
[4] Univ Hosp Cleveland, Div Cardiovasc Med, Med Ctr, Cleveland, OH 44106 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
deep learning; magnetic resonance fingerprinting; neural network; T-1; mapping; T-2; tissue characterization; QUANTIFICATION;
D O I
10.1002/mrm.28568
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
Purpose To develop a deep learning method for rapidly reconstructing T-1 and T-2 maps from undersampled electrocardiogram (ECG) triggered cardiac magnetic resonance fingerprinting (cMRF) images. Methods A neural network was developed that outputs T-1 and T-2 values when given a measured cMRF signal time course and cardiac RR interval times recorded by an ECG. Over 8 million cMRF signals, corresponding to 4000 random cardiac rhythms, were simulated for training. The training signals were corrupted by simulated k-space undersampling artifacts and random phase shifts to promote robust learning. The deep learning reconstruction was evaluated in Monte Carlo simulations for a variety of cardiac rhythms and compared with dictionary-based pattern matching in 58 healthy subjects at 1.5T. Results In simulations, the normalized root-mean-square error (nRMSE) for T-1 was below 1% in myocardium, blood, and liver for all tested heart rates. For T-2, the nRMSE was below 4% for myocardium and liver and below 6% for blood for all heart rates. The difference in the mean myocardial T-1 or T-2 observed in vivo between dictionary matching and deep learning was 3.6 ms for T-1 and -0.2 ms for T-2. Whereas dictionary generation and pattern matching required more than 4 min per slice, the deep learning reconstruction only required 336 ms. Conclusion A neural network is introduced for reconstructing cMRF T-1 and T-2 maps directly from undersampled spiral images in under 400 ms and is robust to arbitrary cardiac rhythms, which paves the way for rapid online display of cMRF maps.
引用
收藏
页码:2127 / 2135
页数:9
相关论文
共 23 条
[1]   STATISTICAL METHODS FOR ASSESSING AGREEMENT BETWEEN TWO METHODS OF CLINICAL MEASUREMENT [J].
BLAND, JM ;
ALTMAN, DG .
LANCET, 1986, 1 (8476) :307-310
[2]   Spiral MR fingerprinting at 7 T with simultaneous B1 estimation [J].
Buonincontri, Guido ;
Schulte, Rolf F. ;
Cosottini, Mirco ;
Tosetti, Michela .
MAGNETIC RESONANCE IMAGING, 2017, 41 :1-6
[3]   Development of fast deep learning quantification for magnetic resonance fingerprinting in vivo [J].
Cao, Peng ;
Cui, Di ;
Vardhanabhuti, Vince ;
Hui, Edward S. .
MAGNETIC RESONANCE IMAGING, 2020, 70 :81-90
[4]   MR fingerprinting Deep RecOnstruction NEtwork (DRONE) [J].
Cohen, Ouri ;
Zhu, Bo ;
Rosen, Matthew S. .
MAGNETIC RESONANCE IN MEDICINE, 2018, 80 (03) :885-894
[5]   Submillimeter MR fingerprinting using deep learning-based tissue quantification [J].
Fang, Zhenghan ;
Chen, Yong ;
Hung, Sheng-Che ;
Zhang, Xiaoxia ;
Lin, Weili ;
Shen, Dinggang .
MAGNETIC RESONANCE IN MEDICINE, 2020, 84 (02) :579-591
[6]   Nonuniform fast Fourier transforms using min-max interpolation [J].
Fessler, JA ;
Sutton, BP .
IEEE TRANSACTIONS ON SIGNAL PROCESSING, 2003, 51 (02) :560-574
[7]   T2 quantification for improved detection of myocardial edema [J].
Giri, Shivraman ;
Chung, Yiu-Cho ;
Merchant, Ali ;
Mihai, Georgeta ;
Rajagopalan, Sanjay ;
Raman, Subha V. ;
Simonetti, Orlando P. .
JOURNAL OF CARDIOVASCULAR MAGNETIC RESONANCE, 2009, 11
[8]   Simultaneous Mapping of T1 and T2 Using Cardiac Magnetic Resonance Fingerprinting in a Cohort of Healthy Subjects at 1.5T [J].
Hamilton, Jesse I. ;
Pahwa, Shivani ;
Adedigba, Joseph ;
Frankel, Samuel ;
O'Connor, Gregory ;
Thomas, Rahul ;
Walker, Jonathan R. ;
Killinc, Ozden ;
Lo, Wei-Ching ;
Batesole, Joshua ;
Margevicius, Seunghee ;
Griswold, Mark ;
Rajagopalan, Sanjay ;
Gulani, Vikas ;
Seiberlich, Nicole .
JOURNAL OF MAGNETIC RESONANCE IMAGING, 2020, 52 (04) :1044-1052
[9]   Investigating and reducing the effects of confounding factors for robust T1 and T2 mapping with cardiac MR fingerprinting [J].
Hamilton, Jesse, I ;
Jiang, Yun ;
Ma, Dan ;
Lo, Wei-Ching ;
Gulani, Vikas ;
Griswold, Mark ;
Seiberlich, Nicole .
MAGNETIC RESONANCE IMAGING, 2018, 53 :40-51
[10]   MR Fingerprinting for Rapid Quantification of Myocardial T1, T2, and Proton Spin Density [J].
Hamilton, Jesse I. ;
Jiang, Yun ;
Chen, Yong ;
Ma, Dan ;
Lo, Wei-Ching ;
Griswold, Mark ;
Seiberlich, Nicole .
MAGNETIC RESONANCE IN MEDICINE, 2017, 77 (04) :1446-1458