The soil metagenome - a rich resource for the discovery of novel natural products

被引:195
作者
Daniel, R [1 ]
机构
[1] Univ Gottingen, Inst Mikrobiol & Genet, D-37077 Gottingen, Germany
关键词
D O I
10.1016/j.copbio.2004.04.005
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Soil microorganisms have been the most valuable source of natural products, providing industrially important antibiotics and biocatalysts. But, of late, the discovery rate of novel biomolecules using traditional cultivation techniques has been extremely low, as most soil microorganisms cannot be cultured in this way. The development of novel cultivation-dependent and molecular cultivation-independent approaches has paved the way for a new era of product recovery from soil microorganisms. In particular, gene-mining based on the construction and screening of complex libraries derived from the soil metagenome provides opportunities to fully explore and exploit the enormous genetic and metabolic diversity of soil microorganisms. This strategy has already resulted in the isolation of novel biocatalysts and bioactive molecules.
引用
收藏
页码:199 / 204
页数:6
相关论文
共 49 条
[1]   New natural product families from an environmental DNA (eDNA) gene cluster [J].
Brady, SF ;
Chao, CJ ;
Clardy, J .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (34) :9968-9969
[2]   Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA [J].
Brady, SF ;
Chao, CJ ;
Handelsman, J ;
Clardy, J .
ORGANIC LETTERS, 2001, 3 (13) :1981-1984
[3]   High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates [J].
Connon, SA ;
Giovannoni, SJ .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2002, 68 (08) :3878-3885
[4]   Quantification of bacterial subgroups in soil:: comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation [J].
Courtois, S ;
Frostegård, Å ;
Göransson, P ;
Depret, G ;
Jeannin, P ;
Simonet, P .
ENVIRONMENTAL MICROBIOLOGY, 2001, 3 (07) :431-439
[5]   Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products [J].
Courtois, S ;
Cappellano, CM ;
Ball, M ;
Francou, FX ;
Normand, P ;
Helynck, G ;
Martinez, A ;
Kolvek, SJ ;
Hopke, J ;
Osburne, MS ;
August, PR ;
Nalin, R ;
Guérineau, M ;
Jeannin, P ;
Simonet, P ;
Pernodet, JL .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (01) :49-55
[6]  
DANIEL R, 2002, DIRECTED MOL EVOLUTI
[7]   Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities [J].
Denef, VJ ;
Park, J ;
Rodrigues, JLM ;
Tsoi, TV ;
Hashsham, SA ;
Tiedje, JM .
ENVIRONMENTAL MICROBIOLOGY, 2003, 5 (10) :933-943
[8]   Phylogenetic classification and the universal tree [J].
Doolittle, WF .
SCIENCE, 1999, 284 (5423) :2124-2128
[9]   Direct cloning from enrichment cultures, a reliable strategy for isolation of complete operons and genes from microbial consortia [J].
Entcheva, P ;
Liebl, W ;
Johann, A ;
Hartsch, T ;
Streit, WR .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2001, 67 (01) :89-99
[10]  
FOSTER RC, 1988, BIOL FERT SOILS, V6, P189, DOI 10.1007/BF00260816