Properties of the polarizable MARTINI water model: A comparative study for aqueous electrolyte solutions

被引:24
作者
Voegele, Martin [1 ]
Holm, Christian [1 ]
Smiatek, Jens [1 ]
机构
[1] Univ Stuttgart, Inst Computat Phys, D-70569 Stuttgart, Germany
关键词
Molecular dynamics; Electrolyte solutions; Coarse-graining; MARTINI force field; COARSE-GRAINED MODEL; MOLECULAR-DYNAMICS; FORCE-FIELD; SIMULATIONS; GROMACS;
D O I
10.1016/j.molliq.2015.08.062
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The coarse-grained MARTINI approach is nowadays used for the simulation of charged systems. A robust and valid water model to reproduce electrostatic screening effects in addition to hydration properties is therefore of crucial importance. We study the properties of the polarizable MARTINI water model in the presence of varying sodium chloride concentrations to test the validity of the approach. The numerical findings are compared to results that are obtained by a Kirkwood-Buff based atomistic force field in combination with the SPC/E water model. An acceptable agreement between both approaches and experimental results is observed for dynamic properties like ionic conductivities, diffusion coefficients and the dielectric constants when a rescaling approach is used. Slighter deviations can be observed for the mass density as well as for the local surrounding of the ions which can be related to the spherical geometry of the polarizable MARTINI water beads. We highlight agreements and differences and discuss the corresponding consequences. (C) 2015 Elsevier B.V. All rights reserved.
引用
收藏
页码:103 / 110
页数:8
相关论文
共 45 条
[41]   GROMACS: Fast, flexible, and free [J].
Van der Spoel, D ;
Lindahl, E ;
Hess, B ;
Groenhof, G ;
Mark, AE ;
Berendsen, HJC .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2005, 26 (16) :1701-1718
[42]   Reply to the 'Comment on "On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models"' by S. J. Marrink, X. Periole, D. Peter Tieleman and Alex H. de Vries, Phys. Chem. Chem. Phys., 2010, 12, DOI: 10.1039/b915293h [J].
van Gunsteren, Wilfred F. ;
Winger, Moritz .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2010, 12 (09) :2257-2258
[43]   A Kirkwood-Buff derived force field for sodium chloride in water [J].
Weerasinghe, S ;
Smith, PE .
JOURNAL OF CHEMICAL PHYSICS, 2003, 119 (21) :11342-11349
[44]   On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models [J].
Winger, Moritz ;
Trzesniak, Daniel ;
Baron, Riccardo ;
van Gunsteren, Wilfred F. .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2009, 11 (12) :1934-1941
[45]   Polarizable Water Model for the Coarse-Grained MARTINI Force Field [J].
Yesylevskyy, Semen O. ;
Schafer, Lars V. ;
Sengupta, Durba ;
Marrink, Siewert J. .
PLOS COMPUTATIONAL BIOLOGY, 2010, 6 (06) :1-17