Structural biology of CRISPR-Cas immunity and genome editing enzymes

被引:116
作者
Wang, Joy Y. [1 ,2 ]
Pausch, Patrick [3 ]
Doudna, Jennifer A. [1 ,2 ,4 ,5 ,6 ,7 ,8 ,9 ]
机构
[1] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Innovat Genom Inst, Berkeley, CA 94720 USA
[3] Vilnius Univ, Life Sci Ctr, VU LSC EMBL Partnership Genome Editing Technol, Vilnius, Lithuania
[4] Univ Calif Berkeley, Howard Hughes Med Inst, Berkeley, CA 94720 USA
[5] Univ Calif Berkeley, Dept Mol & Cell Biol, 229 Stanley Hall, Berkeley, CA 94720 USA
[6] Univ Calif Berkeley, Calif Inst Quantitat Biosci QB3, Berkeley, CA 94720 USA
[7] Lawrence Berkeley Natl Lab, MBIB Div, Berkeley, CA USA
[8] Univ Calif San Francisco, Gladstone Inst, San Francisco, CA 94143 USA
[9] Gladstone UCSF Inst Genom Immunol, San Francisco, CA USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
RNA-GUIDED ENDONUCLEASE; TARGET DNA RECOGNITION; R-LOOP COMPLEX; SPACER ACQUISITION; CONFORMATIONAL CONTROL; PAM RECOGNITION; FUNCTIONAL-CHARACTERIZATION; ADAPTIVE IMMUNITY; CRYSTAL-STRUCTURE; STRUCTURE REVEALS;
D O I
10.1038/s41579-022-00739-4
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
CRISPR-Cas systems provide resistance against foreign mobile genetic elements and have a wide range of genome editing and biotechnological applications. In this Review, we examine recent advances in understanding the molecular structures and mechanisms of enzymes comprising bacterial RNA-guided CRISPR-Cas immune systems and deployed for wide-ranging genome editing applications. We explore the adaptive and interference aspects of CRISPR-Cas function as well as open questions about the molecular mechanisms responsible for genome targeting. These structural insights reflect close evolutionary links between CRISPR-Cas systems and mobile genetic elements, including the origins and evolution of CRISPR-Cas systems from DNA transposons, retrotransposons and toxin-antitoxin modules. We discuss how the evolution and structural diversity of CRISPR-Cas systems explain their functional complexity and utility as genome editing tools. CRISPR-Cas systems provide resistance against foreign mobile genetic elements and have a wide range of genome editing and biotechnological applications. In this Review, Wang, Pausch and Doudna examine recent advances in understanding the molecular structures and mechanisms of enzymes comprising bacterial RNA-guided CRISPR-Cas immune systems and deployed for wide-ranging genome editing applications.
引用
收藏
页码:641 / 656
页数:16
相关论文
共 181 条
[1]   The widespread IS200/IS605 transposon family encodes diverse programmable RNA-guided endonucleases [J].
Altae-Tran, Han ;
Kannan, Soumya ;
Demircioglu, F. Esra ;
Oshiro, Rachel ;
Nety, Suchita P. ;
McKay, Luke J. ;
Dlakic, Mensur ;
Inskeep, William P. ;
Makarova, Kira S. ;
Macrae, Rhiannon K. ;
Koonin, Eugene, V ;
Zhang, Feng .
SCIENCE, 2021, 374 (6563) :57-+
[2]   Structural Plasticity of PAM Recognition by Engineered Variants of the RNA-Guided Endonuclease Cas9 [J].
Anders, Carolin ;
Bargsten, Katja ;
Jinek, Martin .
MOLECULAR CELL, 2016, 61 (06) :895-902
[3]   Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease [J].
Anders, Carolin ;
Niewoehner, Ole ;
Duerst, Alessia ;
Jinek, Martin .
NATURE, 2014, 513 (7519) :569-+
[4]   Genome editing with CRISPR-Cas nucleases, base editors, transposases and prime editors [J].
Anzalone, Andrew V. ;
Koblan, Luke W. ;
Liu, David R. .
NATURE BIOTECHNOLOGY, 2020, 38 (07) :824-844
[5]   Detection and characterization of spacer integration intermediates in type I-E CRISPR-Cas system [J].
Arslan, Zihni ;
Hermanns, Veronica ;
Wurm, Reinhild ;
Wagner, Rolf ;
Pul, Uemit .
NUCLEIC ACIDS RESEARCH, 2014, 42 (12) :7884-7893
[6]   CRISPR provides acquired resistance against viruses in prokaryotes [J].
Barrangou, Rodolphe ;
Fremaux, Christophe ;
Deveau, Helene ;
Richards, Melissa ;
Boyaval, Patrick ;
Moineau, Sylvain ;
Romero, Dennis A. ;
Horvath, Philippe .
SCIENCE, 2007, 315 (5819) :1709-1712
[7]   Casposon integration shows strong target site preference and recapitulates protospacer integration by CRISPR-Cas systems [J].
Beguin, Pierre ;
Charpin, Nicole ;
Koonin, Eugene V. ;
Forterre, Patrick ;
Krupovic, Mart .
NUCLEIC ACIDS RESEARCH, 2016, 44 (21) :10367-10376
[8]   Approaches to study CRISPR RNA biogenesis and the key players involved [J].
Behler, Juliane ;
Hess, Wolfgang R. .
METHODS, 2020, 172 :12-26
[9]   Structural and dynamic insights into the HNH nuclease of divergent Cas9 species [J].
Belato, Helen B. ;
D'Ordine, Alexandra M. ;
Nierzwicki, Lukasz ;
Arantes, Pablo R. ;
Jogl, Gerwald ;
Palermo, Giulia ;
Lisi, George P. .
JOURNAL OF STRUCTURAL BIOLOGY, 2022, 214 (01)
[10]   Structural Basis for Toxin Inhibition in the VapXD Toxin-Antitoxin System [J].
Bertelsen, Marie B. ;
Senissar, Meriem ;
Nielsen, Maja H. ;
Bisiak, Francesco ;
Cunha, Marta, V ;
Molinaro, Ashley L. ;
Daines, Dayle A. ;
Brodersen, Ditlev E. .
STRUCTURE, 2021, 29 (02) :139-+