The C-terminal domain of full-length E-coli SSB is disordered even when bound to DNA

被引:117
|
作者
Savvides, SN [1 ]
Raghunathan, S [1 ]
Fütterer, K [1 ]
Kozlov, AG [1 ]
Lohman, TM [1 ]
Waksman, G [1 ]
机构
[1] Washington Univ, Sch Med, Dept Biochem & Mol Biophys, St Louis, MO 63110 USA
关键词
SSB; crystal structure; DNA replication; ssDNA; protein disorder;
D O I
10.1110/ps.04661904
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The crystal structure of full-length homotetrameric single-stranded DNA (ssDNA)-binding protein from Escherichia coli (SSB) has been determined to 3.3 Angstrom resolution and reveals that the entire C-terminal domain is disordered even in the presence of ssDNA. To our knowledge, this is the first experimental evidence that the C-terminal domain of SSB may be inherently disordered. The N-terminal DNA-binding domain of the protein is well ordered and is virtually indistinguishable from the previously determined structure of the chymotryptic fragment of SSB (SSBc) in complex with ssDNA. The absence of observable interactions with the core protein and the crystal packing of SSB together suggest that the disordered C-terminal domains likely extend laterally away from the DNA- binding domains, which may facilitate interactions with components of the replication machinery in vivo. The structure also reveals the conservation of molecular contacts between successive tetramers mediated by the L-45 loops as seen in two other crystal forms of SSBc, suggesting a possible functional relevance of this interaction.
引用
收藏
页码:1942 / 1947
页数:6
相关论文
共 50 条
  • [31] Full-length TDP-43 and its C-terminal domain form filamentsin vitrohaving non-amyloid properties
    Capitini, Claudia
    Fani, Giulia
    Vega, Mirella Vivoli
    Penco, Amanda
    Canale, Claudio
    Cabrita, Lisa D.
    Calamai, Martino
    Christodoulou, John
    Relini, Annalisa
    Chiti, Fabrizio
    AMYLOID-JOURNAL OF PROTEIN FOLDING DISORDERS, 2021, 28 (01): : 56 - 65
  • [32] Structure of a bacterial full-length type 2 IleRS reveals the C-terminal tRNA binding domain insertion dispensable for aminoacylation
    Brkic, A.
    Bozic, B.
    Leibundgut, M.
    Sovulj, I. Gruic
    Ban, N.
    FEBS OPEN BIO, 2021, 11 : 192 - 193
  • [33] An intersubunit contact stimulating transcription initiation by E-coli RNA polymerase:: interaction of the α C-terminal domain and σ region 4
    Ross, W
    Schneider, DA
    Paul, BJ
    Mertens, A
    Gourse, RL
    GENES & DEVELOPMENT, 2003, 17 (10) : 1293 - 1307
  • [34] Effects of gene dosage on the expression of a functionally active C-terminal domain of human mucus proteinase inhibitor in E-coli
    Blaukat, A
    Kemme, M
    PROTEIN AND PEPTIDE LETTERS, 1999, 6 (01): : 35 - 41
  • [35] Aph-1 Associates Directly with Full-length and C-terminal Fragments of γ-Secretase Substrates
    Chen, Allen C.
    Guo, Lucie Y.
    Ostaszewski, Beth L.
    Selkoe, Dennis J.
    LaVoie, Matthew J.
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (15) : 11378 - 11391
  • [36] CONTRIBUTION OF THE C-TERMINAL DOMAIN OF METALLOPROTEINASES TO BINDING BY TISSUE INHIBITOR OF METALLOPROTEINASES - C-TERMINAL TRUNCATED STROMELYSIN AND MATRILYSIN EXHIBIT EQUALLY COMPROMISED BINDING AFFINITIES AS COMPARED TO FULL-LENGTH STROMELYSIN
    BARAGI, VM
    FLISZAR, CJ
    CONROY, MC
    YE, QZ
    SHIPLEY, JM
    WELGUS, HG
    JOURNAL OF BIOLOGICAL CHEMISTRY, 1994, 269 (17) : 12692 - 12697
  • [37] Effect of C-terminal ε truncation on Pi regulation of the E-coli ATP-synthase
    D'Alessandro, Manuela
    Melandri, B. Andrea
    Dunn, Stanley D.
    BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2008, 1777 : S17 - S17
  • [38] Full-length Gαq-phospholipase C-β3 structure reveals interfaces of the C-terminal coiled-coil domain
    Lyon, Angeline M.
    Dutta, Somnath
    Boguth, Cassandra A.
    Skiniotis, Georgios
    Tesmer, John J. G.
    NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2013, 20 (03) : 355 - 362
  • [39] A truncated isoform of c-Mpl with an essential C-terminal peptide targets the full-length receptor for degradation
    Coers, J
    Ranft, C
    Skoda, RC
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (35) : 36397 - 36404
  • [40] Crystal Structure Of Full-length Kcsa Trapped In Open Conformation Reveals That C-terminal Domain Fine Tunes Activation And Coupled Inactivation
    Uysal, Serdar
    Cuello, Luis G.
    Jogini, Vishwanath
    Cortes, D. Marien
    Koide, Shohei
    Perozo, Eduardo
    Kossiakoff, Anthony
    BIOPHYSICAL JOURNAL, 2009, 96 (03) : 370A - 370A