In vivo base editing of post-mitotic sensory cells

被引:161
作者
Yeh, Wei-Hsi [1 ,2 ,3 ,4 ,5 ]
Chiang, Hao [4 ,6 ]
Rees, Holly A. [1 ,2 ,3 ]
Edge, Albert S. B. [4 ,5 ,6 ,7 ]
Liu, David R. [1 ,2 ,3 ]
机构
[1] Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA
[2] Harvard Univ, Howard Hughes Med Inst, Cambridge, MA 02138 USA
[3] Broad Inst MIT & Harvard, Merkin Inst Transformat Technol Healthcare, Cambridge, MA 02142 USA
[4] Massachusetts Eye & Ear, Eaton Peabody Lab, Boston, MA 02114 USA
[5] Harvard Med Sch, Program Speech & Hearing Biosci & Technol, Boston, MA 02115 USA
[6] Harvard Med Sch, Dept Otolaryngol, Boston, MA 02115 USA
[7] Harvard Stem Cell Inst, Cambridge, MA 02138 USA
关键词
CRISPR-CAS NUCLEASES; OFF-TARGET; DNA CLEAVAGE; MAMMALIAN COCHLEA; NEONATAL MICE; GENOMIC DNA; HAIR-CELLS; STEM-CELLS; WNT; PROGENITORS;
D O I
10.1038/s41467-018-04580-3
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Programmable nucleases can introduce precise changes to genomic DNA through homology-directed repair (HDR). Unfortunately, HDR is largely restricted to mitotic cells, and is typically accompanied by an excess of stochastic insertions and deletions (indels). Here we present an in vivo base editing strategy that addresses these limitations. We use nuclease-free base editing to install a S33F mutation in beta-catenin that blocks beta-catenin phosphorylation, impedes beta-catenin degradation, and upregulates Wnt signaling. In vitro, base editing installs the S33F mutation with a 200-fold higher editing: indel ratio than HDR. In post-mitotic cells in mouse inner ear, injection of base editor protein: RNA: lipid installs this mutation, resulting in Wnt activation that induces mitosis of cochlear supporting cells and cellular reprogramming. In contrast, injection of HDR agents does not induce Wnt upregulation. These results establish a strategy for modifying posttranslational states in signaling pathways, and an approach to precision editing in post-mitotic tissues.
引用
收藏
页数:10
相关论文
共 60 条
[11]   Finding pathways to national-scale land-sector sustainability [J].
Gao, Lei ;
Bryan, Brett A. .
NATURE, 2017, 544 (7649) :217-+
[12]   Programmable base editing of A.T to G.C in genomic DNA without DNA cleavage [J].
Gaudelli, Nicole M. ;
Komor, Alexis C. ;
Rees, Holly A. ;
Packer, Michael S. ;
Badran, Ahmed H. ;
Bryson, David I. ;
Liu, David R. .
NATURE, 2017, 551 (7681) :464-+
[13]   Comprehensive Expression of Wnt Signaling Pathway Genes during Development and Maturation of the Mouse Cochlea [J].
Geng, Ruishuang ;
Noda, Teppei ;
Mulvaney, Joanna F. ;
Lin, Vincent Y. W. ;
Edge, Albert S. B. ;
Dabdoub, Alain .
PLOS ONE, 2016, 11 (02)
[14]   Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR [J].
Haeussler, Maximilian ;
Schoenig, Kai ;
Eckert, Helene ;
Eschstruth, Alexis ;
Mianne, Joffrey ;
Renaud, Jean-Baptiste ;
Schneider-Maunoury, Sylvie ;
Shkumatava, Alena ;
Teboul, Lydia ;
Kent, Jim ;
Joly, Jean-Stephane ;
Concordet, Jean-Paul .
GENOME BIOLOGY, 2016, 17
[15]   Replisome assembly and the direct restart of stalled replication forks [J].
Heller, Ryan C. ;
Marians, Kenneth J. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2006, 7 (12) :932-943
[16]  
Hess GT, 2016, NAT METHODS, V13, P1036, DOI [10.1038/NMETH.4038, 10.1038/nmeth.4038]
[17]   Regulation of Homologous Recombination in Eukaryotes [J].
Heyer, Wolf-Dietrich ;
Ehmsen, Kirk T. ;
Liu, Jie .
ANNUAL REVIEW OF GENETICS, VOL 44, 2010, 44 :113-139
[18]   Diphtheria Toxin-Induced Cell Death Triggers Wnt-Dependent Hair Cell Regeneration in Neonatal Mice [J].
Hu, Lingxiang ;
Lu, Jingrong ;
Chiang, Hao ;
Wu, Hao ;
Edge, Albert S. B. ;
Shi, Fuxin .
JOURNAL OF NEUROSCIENCE, 2016, 36 (36) :9479-9489
[19]   A dual function for canonical Wnt/β-catenin signaling in the developing mammalian cochlea [J].
Jacques, Bonnie E. ;
Puligilla, Chandrakala ;
Weichert, Rachel M. ;
Ferrer-Vaquer, Anna ;
Hadjantonakis, Anna-Katerina ;
Kelley, Matthew W. ;
Dabdoub, Alain .
DEVELOPMENT, 2012, 139 (23) :4395-4404
[20]   Tympanic border cells are Wnt-responsive and can act as progenitors for postnatal mouse cochlear cells [J].
Jan, Taha Adnan ;
Chai, Renjie ;
Sayyid, Zahra Nabi ;
van Amerongen, Renee ;
Xia, Anping ;
Wang, Tian ;
Sinkkonen, Saku Tapani ;
Zeng, Yi Arial ;
Levin, Jared Ruben ;
Heller, Stefan ;
Nusse, Roel ;
Cheng, Alan Gi-Lun .
DEVELOPMENT, 2013, 140 (06) :1196-1206