In vivo base editing of post-mitotic sensory cells

被引:161
作者
Yeh, Wei-Hsi [1 ,2 ,3 ,4 ,5 ]
Chiang, Hao [4 ,6 ]
Rees, Holly A. [1 ,2 ,3 ]
Edge, Albert S. B. [4 ,5 ,6 ,7 ]
Liu, David R. [1 ,2 ,3 ]
机构
[1] Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA
[2] Harvard Univ, Howard Hughes Med Inst, Cambridge, MA 02138 USA
[3] Broad Inst MIT & Harvard, Merkin Inst Transformat Technol Healthcare, Cambridge, MA 02142 USA
[4] Massachusetts Eye & Ear, Eaton Peabody Lab, Boston, MA 02114 USA
[5] Harvard Med Sch, Program Speech & Hearing Biosci & Technol, Boston, MA 02115 USA
[6] Harvard Med Sch, Dept Otolaryngol, Boston, MA 02115 USA
[7] Harvard Stem Cell Inst, Cambridge, MA 02138 USA
关键词
CRISPR-CAS NUCLEASES; OFF-TARGET; DNA CLEAVAGE; MAMMALIAN COCHLEA; NEONATAL MICE; GENOMIC DNA; HAIR-CELLS; STEM-CELLS; WNT; PROGENITORS;
D O I
10.1038/s41467-018-04580-3
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Programmable nucleases can introduce precise changes to genomic DNA through homology-directed repair (HDR). Unfortunately, HDR is largely restricted to mitotic cells, and is typically accompanied by an excess of stochastic insertions and deletions (indels). Here we present an in vivo base editing strategy that addresses these limitations. We use nuclease-free base editing to install a S33F mutation in beta-catenin that blocks beta-catenin phosphorylation, impedes beta-catenin degradation, and upregulates Wnt signaling. In vitro, base editing installs the S33F mutation with a 200-fold higher editing: indel ratio than HDR. In post-mitotic cells in mouse inner ear, injection of base editor protein: RNA: lipid installs this mutation, resulting in Wnt activation that induces mitosis of cochlear supporting cells and cellular reprogramming. In contrast, injection of HDR agents does not induce Wnt upregulation. These results establish a strategy for modifying posttranslational states in signaling pathways, and an approach to precision editing in post-mitotic tissues.
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页数:10
相关论文
共 60 条
[1]   Seamless site-directed mutagenesis of the Saccharomyces cerevisiae genome using CRISPR-Cas9 [J].
Biot-Pelletier, Damien ;
Martin, Vincent J. J. .
JOURNAL OF BIOLOGICAL ENGINEERING, 2016, 10
[2]   In Vivo Base Editing of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) as a Therapeutic Alternative to Genome Editing [J].
Chadwick, Alexandra C. ;
Wang, Xiao ;
Musunuru, Kiran .
ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY, 2017, 37 (09) :1741-+
[3]   Wnt signaling induces proliferation of sensory precursors in the postnatal mouse cochlea [J].
Chai, Renjie ;
Kuo, Bryan ;
Wang, Tian ;
Liaw, Eric J. ;
Xia, Anping ;
Jan, Taha A. ;
Liu, Zhiyong ;
Taketo, Makoto M. ;
Oghalai, John S. ;
Nusse, Roeland ;
Zuo, Jian ;
Cheng, Alan G. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (21) :8167-8172
[4]   Dynamic Expression of Lgr5, a Wnt Target Gene, in the Developing and Mature Mouse Cochlea [J].
Chai, Renjie ;
Xia, Anping ;
Wang, Tian ;
Jan, Taha Adnan ;
Hayashi, Toshinori ;
Bermingham-McDonogh, Olivia ;
Cheng, Alan Gi-Lun .
JARO-JOURNAL OF THE ASSOCIATION FOR RESEARCH IN OTOLARYNGOLOGY, 2011, 12 (04) :455-469
[5]   Therapeutic genome editing: prospects and challenges [J].
Cox, David Benjamin Turitz ;
Platt, Randall Jeffrey ;
Zhang, Feng .
NATURE MEDICINE, 2015, 21 (02) :121-131
[6]  
Davis KM, 2015, NAT CHEM BIOL, V11, P316, DOI [10.1038/NCHEMBIO.1793, 10.1038/nchembio.1793]
[7]   Modulation of Wnt Signaling Enhances Inner Ear Organoid Development in 3D Culture [J].
DeJonge, Rachel E. ;
Liu, Xiao-Ping ;
Deig, Christopher R. ;
Heller, Stefan ;
Koehler, Karl R. ;
Hashino, Eri .
PLOS ONE, 2016, 11 (09)
[8]   The new frontier of genome engineering with CRISPR-Cas9 [J].
Doudna, Jennifer A. ;
Charpentier, Emmanuelle .
SCIENCE, 2014, 346 (6213) :1077-+
[9]   GSK-3 inhibitors: preclinical and clinical focus on CNS [J].
Eldar-Finkelman, Hagit ;
Martinez, Ana .
FRONTIERS IN MOLECULAR NEUROSCIENCE, 2011, 4
[10]   High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells [J].
Fu, Yanfang ;
Foden, Jennifer A. ;
Khayter, Cyd ;
Maeder, Morgan L. ;
Reyon, Deepak ;
Joung, J. Keith ;
Sander, Jeffry D. .
NATURE BIOTECHNOLOGY, 2013, 31 (09) :822-+