The genesis of high-throughput structure-based drug discovery using protein crystallography

被引:96
作者
Kuhn, P
Wilson, K
Patch, MG
Stevens, RC
机构
[1] Stanford Univ, Stanford Synchrotron Radiat Lab, Menlo Pk, CA 94025 USA
[2] Syrrx Inc, San Diego, CA 92121 USA
[3] Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
[4] Joint Ctr Struct Genom, La Jolla, CA USA
关键词
D O I
10.1016/S1367-5931(02)00361-7
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Over the past 12 years, drugs have been developed using structure-based drug design relying upon traditional crystallographic methods. Established successes, such as the drugs designed against HIV-1 protease and neuraminidase, demonstrate the utility of a structure-based approach in the drug-discovery process. However, the approach has historically lacked throughput and reliability capabilities; these bottlenecks are being overcome by breakthroughs in high-throughput structural biology. Recent technological innovations such as submicroliter high-throughput crystallization, high-performance synchrotron beamlines and rapid binding-site analysis of de novo targets using virtual ligand screening and small molecule co-crystallization have resulted in a significant advance in structure-based drug discovery.
引用
收藏
页码:704 / 710
页数:7
相关论文
共 73 条
[1]   High-throughput docking for lead generation [J].
Abagyan, R ;
Totrov, M .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2001, 5 (04) :375-382
[2]   Automation of X-ray crystallography [J].
Abola, E ;
Kuhn, P ;
Earnest, T ;
Stevens, RC .
NATURE STRUCTURAL BIOLOGY, 2000, 7 (Suppl 11) :973-977
[3]   Recent developments in software for the automation of crystallographic macromolecular structure determination [J].
Adams, PD ;
Grosse-Kunstleve, RW .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2000, 10 (05) :564-568
[4]   Rational design of selective submicromolar inhibitors of Tritrichomonas foetus hypoxanthine-guanine-xanthine phosphoribosyltransferase [J].
Aronov, AM ;
Munagala, NR ;
de Montellano, PRO ;
Kuntz, ID ;
Wang, CC .
BIOCHEMISTRY, 2000, 39 (16) :4684-4691
[5]   BCX-1812 (RWJ-270201): Discovery of a novel, highly potent, orally active, and selective influenza neuraminidase inhibitor through structure-based drug design [J].
Babu, YS ;
Chand, P ;
Bantia, S ;
Kotian, P ;
Dehghani, A ;
El-Kattan, Y ;
Lin, TH ;
Hutchison, TL ;
Elliott, AJ ;
Parker, CD ;
Ananth, SL ;
Horn, LL ;
Laver, GW ;
Montgomery, JA .
JOURNAL OF MEDICINAL CHEMISTRY, 2000, 43 (19) :3482-3486
[6]   High-throughput crystallography for lead discovery in drug design [J].
Blundell, TL ;
Jhoti, H ;
Abell, C .
NATURE REVIEWS DRUG DISCOVERY, 2002, 1 (01) :45-54
[7]   Novel inhibitors of DNA gyrase: 3D structure based biased needle screening, hit validation by biophysical methods, and 3D guided optimization. A promising alternative to random screening [J].
Boehm, HJ ;
Boehringer, M ;
Bur, D ;
Gmuender, H ;
Huber, W ;
Klaus, W ;
Kostrewa, D ;
Kuehne, H ;
Luebbers, T ;
Meunier-Keller, N .
JOURNAL OF MEDICINAL CHEMISTRY, 2000, 43 (14) :2664-2674
[8]   Adenosine analogues as selective inhibitors of glyceraldehyde-3-phosphate dehydrogenase of Trypanosomatidae via structure-based drug design [J].
Bressi, JC ;
Verlinde, CLMJ ;
Aronov, AM ;
Le Shaw, M ;
Shin, SS ;
Nguyen, LN ;
Suresh, S ;
Buckner, FS ;
Van Voorhis, WC ;
Kuntz, ID ;
Hol, WGJ ;
Gelb, MH .
JOURNAL OF MEDICINAL CHEMISTRY, 2001, 44 (13) :2080-2093
[9]   Consensus scoring: A method for obtaining improved hit rates from docking databases of three-dimensional structures into proteins [J].
Charifson, PS ;
Corkery, JJ ;
Murcko, MA ;
Walters, WP .
JOURNAL OF MEDICINAL CHEMISTRY, 1999, 42 (25) :5100-5109
[10]   Novel lead generation through hypothetical pharmacophore three-dimensional database searching:: Discovery of isoflavonoids as nonsteroidal inhibitors of rat 5α-reductase [J].
Chen, GS ;
Chang, CS ;
Kan, WM ;
Chang, CL ;
Wang, KC ;
Chern, JW .
JOURNAL OF MEDICINAL CHEMISTRY, 2001, 44 (23) :3759-3763