Association Mapping for Quantitative Trait Loci Controlling Superoxide Dismutase, Flavonoids, Anthocyanins, Carotenoids, γ-Oryzanol and Antioxidant Activity in Rice

被引:13
作者
Bastia, Ramakrushna [1 ,2 ]
Pandit, Elssa [1 ,3 ]
Sanghamitra, Priyadarsini [1 ]
Barik, Saumya Ranjan [1 ]
Nayak, Deepak Kumar [1 ]
Sahoo, Auromira [1 ]
Moharana, Arpita [1 ]
Meher, Jitendriya [1 ]
Dash, Prasanta K. [4 ]
Raj, Reshmi [1 ]
Jena, Binod Kumar [5 ]
Pradhan, Kartik Chandra [2 ]
Lenka, Devraj [2 ]
Basak, Nabaneeta [1 ]
Lenka, Srikanta [1 ]
Pradhan, Sharat Kumar [1 ]
机构
[1] ICAR Natl Rice Res Inst, Cuttack 753006, India
[2] OUAT, Coll Agr, Bhubaneswar 751003, India
[3] Fakir Mohan Univ, Biosci & Biotechnol Dept, Balasore 756020, India
[4] ICAR Natl Inst Plant Biotechnol, New Delhi 110012, India
[5] OUAT, KVK, Rayagada 765022, India
来源
AGRONOMY-BASEL | 2022年 / 12卷 / 12期
关键词
ABTS; antioxidant activity; anthocyanins; association mapping; flavonoids; gamma-oryzanol; superoxide dismutase; GENE; BIOSYNTHESIS; CAPACITY; POLYPHENOLS; ENVIRONMENT; DIVERSITY; SOFTWARE; PERICARP; QUALITY; RC;
D O I
10.3390/agronomy12123036
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Antioxidant-rich rice is a cheaper way to solve stress-related disorders and other health benefits for the global rice-eating population. Five antioxidant traits, namely, superoxide dismutase, flavonoids, anthocyanins, gamma-oryzanol and 2,2 '-azino-bis-3-ethylbenzthiazoline-6-sulphonic acid (ABTS) activity were mapped using a representative panel population through association mapping. Potential landraces carrying multiple antioxidant compounds were identified from the population. The population represented four genetic groups and correspondence for presence of antioxidants traits in each group was noticed. The population showed linkage disequilibrium for the studied traits based on the Fst values. A total of 14 significant marker-trait associations were detected for these antioxidant traits. The study validated the QTLs, qANC3 and qPAC12-2 for anthocyanin content and qAC12 for ABTS activity will be useful in marker-assisted breeding. Eleven QTLs such as qTAC1.1 and qTAC5.1 controlling anthocyanin content, qSOD1.1, qSOD5.1 and qSOD10.1 for superoxide dismutase (SOD), qTFC6.1, qTFC11.1 and qTFC12.1 for total flavonoids content (TFC), qOZ8.1 and qOZ11.1 for gamma-oryzanol (OZ) and qAC11.1 for ABTS activity were detected as novel loci. Chromosomal locations on 11 at 45.3 cM regulating GO, TFC and TAC, and on the chromosome 12 at 101.8 cM controlling TAC and ABTS activity, respectively, were detected as antioxidant hotspots.
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页数:32
相关论文
共 76 条
[1]  
Arjun P., 2020, J PLANT BIOL CROP RE, V3, P1022
[2]   Genomics-Integrated Breeding for Carotenoids and Folates in Staple Cereal Grains to Reduce Malnutrition [J].
Ashokkumar, Kaliyaperumal ;
Govindaraj, Mahalingam ;
Karthikeyan, Adhimoolam ;
Shobhana, V. G. ;
Warkentin, Thomas D. .
FRONTIERS IN GENETICS, 2020, 11
[3]  
Ashraf H., 2017, J Pharmacogn Phytochem, V6, P910
[4]   Bottlenecks in carotenoid biosynthesis and accumulation in rice endosperm are influenced by the precursor-product balance [J].
Bai, Chao ;
Capell, Teresa ;
Berman, Judit ;
Medina, Vicente ;
Sandmann, Gerhard ;
Christou, Paul ;
Zhu, Changfu .
PLANT BIOTECHNOLOGY JOURNAL, 2016, 14 (01) :195-205
[5]   QTL mapping for relative water content trait at reproductive stage drought stress in rice [J].
Barik, S. R. ;
Pandit, E. ;
Pradhan, S. K. ;
Singh, S. ;
Swain, P. ;
Mohapatra, T. .
INDIAN JOURNAL OF GENETICS AND PLANT BREEDING, 2018, 78 (04) :401-408
[6]   Unraveling the genomic regions controlling the seed vigour index, root growth parameters and germination per cent in rice [J].
Barik, Saumya Ranjan ;
Pandit, Elssa ;
Sanghamitra, Priyadarshini ;
Mohanty, Shakti Prakash ;
Behera, Abhisarika ;
Mishra, Jyotirmayee ;
Nayak, Deepak Kumar ;
Bastia, Ramakrushna ;
Moharana, Arpita ;
Sahoo, Auromira ;
Pradhan, Sharat Kumar .
PLOS ONE, 2022, 17 (07)
[7]   Genetic mapping of morpho-physiological traits involved during reproductive stage drought tolerance in rice [J].
Barik, Saumya Ranjan ;
Pandit, Elssa ;
Pradhan, Sharat Kumar ;
Mohanty, Shakti Prakash ;
Mohapatra, Trilochan .
PLOS ONE, 2019, 14 (12)
[8]   TASSEL: software for association mapping of complex traits in diverse samples [J].
Bradbury, Peter J. ;
Zhang, Zhiwu ;
Kroon, Dallas E. ;
Casstevens, Terry M. ;
Ramdoss, Yogesh ;
Buckler, Edward S. .
BIOINFORMATICS, 2007, 23 (19) :2633-2635
[9]   Comparison of three spectrophotometric methods for the determination of γ-oryzanol in rice bran oil [J].
Bucci, R ;
Magrì, AD ;
Magrì, AL ;
Marini, F .
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2003, 375 (08) :1254-1259
[10]   Transcriptomic Analysis Reveals Important Roles of Lignin and Flavonoid Biosynthetic Pathways in Rice Thermotolerance During Reproductive Stage [J].
Cai, Zhenzhen ;
He, Fengyu ;
Feng, Xin ;
Liang, Tong ;
Wang, Hongwei ;
Ding, Shuangcheng ;
Tian, Xiaohai .
FRONTIERS IN GENETICS, 2020, 11