Dynamics of Biopolymers: Role of Hydration and Electrostatic Interactions

被引:4
|
作者
Roh, Joon Ho [1 ,2 ]
机构
[1] Inst for Basic Sci Korea, Ctr Self Assembly & Complex, 77 Cheongam Ro, Pohang 790784, South Korea
[2] Univ Sci & Technol, Biomol Sci, 217 Gajeong Ro, Daejeon 305350, South Korea
基金
美国国家科学基金会;
关键词
biopolymer; electrostatic interaction; hydration; molecular dynamics; quasielastic neutron scattering; INTRINSICALLY DISORDERED PROTEINS; ENZYME-ACTIVITY; TRANSFER-RNA; TRANSITION; WATER; MOTIONS; FLEXIBILITY; IONS; NMR;
D O I
10.1002/macp.201500279
中图分类号
O63 [高分子化学(高聚物)];
学科分类号
070305 ; 080501 ; 081704 ;
摘要
This contribution highlights the recently developed microscopic picture of the effects of hydration and electrostatic interactions on subnanosecond dynamics of biopolymers protein and ribonucleic acid (RNA), studied by quasielastic neutron scattering spectroscopy. In contrast to the traditional concept of water-slaved dynamics, more detailed analysis of the dynamics of different chemical structures (lysozyme vs transfer RNA; electrostatically unscreened vs screened) demonstrates that chemical and physical responses of biopolymers to hydration and charge screening determine the dynamic interactions. How the relationship of the dynamical flexibility and structural stability varies depending on water-driven or charge screening-driven folding into biologically active structures has also been discussed. However, the biological relevance of the fast conformational dynamics still remains elusive. Exploring the dynamic heterogeneity of biopolymers is proposed as a potential approach to the identification of biologically important dynamics.
引用
收藏
页码:256 / 265
页数:10
相关论文
共 50 条
  • [11] Role of electrostatic interactions in particle adsorption
    Adamczyk, Z
    Warszynski, P
    ADVANCES IN COLLOID AND INTERFACE SCIENCE, 1996, 63 : 41 - 149
  • [12] THE ROLE OF ELECTROSTATIC FORCES IN INTERMOLECULAR INTERACTIONS
    KOBER, EM
    LEE, DD
    RITCHIE, JP
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1989, 197 : 143 - ORGN
  • [13] Role of electrostatic and van der Waals interactions on the in vacuo unfolding dynamics of lysozyme ions
    Arteca, GA
    Reimann, CT
    Tapia, O
    CHEMICAL PHYSICS LETTERS, 2001, 350 (3-4) : 277 - 285
  • [14] Role of electrostatic interactions in amyloid β-protein (Aβ) oligomer formation:: A discrete molecular dynamics study
    Yun, Sijung
    Urbanc, B.
    Cruz, L.
    Bitan, G.
    Teplow, D. B.
    Stanley, H. E.
    BIOPHYSICAL JOURNAL, 2007, 92 (11) : 4064 - 4077
  • [15] The Role of Electrostatic Interactions in Folding of β-Proteins
    Davis, Caitlin M.
    Dyer, R. Brian
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2016, 138 (04) : 1456 - 1464
  • [16] Stretching DNA: Role of electrostatic interactions
    N. Lee
    D. Thirumalai
    The European Physical Journal B - Condensed Matter and Complex Systems, 1999, 12 : 599 - 605
  • [17] Stretching DNA: Role of electrostatic interactions
    Lee, N
    Thirumalai, D
    EUROPEAN PHYSICAL JOURNAL B, 1999, 12 (04): : 599 - 605
  • [18] ROLE OF ELECTROSTATIC INTERACTIONS IN ALLOSTERIC PROTEINS
    EPSTEIN, HF
    JOURNAL OF THEORETICAL BIOLOGY, 1971, 31 (01) : 69 - &
  • [19] ELECTROSTATIC INTERACTIONS AND THEIR ROLE IN COADSORPTION PHENOMENA
    HOLLOWAY, S
    NORSKOV, JK
    LANG, ND
    JOURNAL OF THE CHEMICAL SOCIETY-FARADAY TRANSACTIONS I, 1987, 83 : 1935 - 1943
  • [20] ELECTROSTATIC INTERACTIONS AND HYDRATION IN 1-1 ELECTROLYTE-SOLUTIONS
    POWELL, DB
    LEIFER, L
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1981, 181 (MAR): : 130 - PHYS