The genome of Eucalyptus grandis

被引：664

作者：

Myburg, Alexander A. ^{[1
,2
]}

Grattapaglia, Dario ^{[3
,4
]}

Tuskan, Gerald A. ^{[5
,6
]}

Hellsten, Uffe ^{[5
]}

Hayes, Richard D. ^{[5
]}

Grimwood, Jane ^{[7
]}

Jenkins, Jerry ^{[7
]}

Lindquist, Erika ^{[5
]}

Tice, Hope ^{[5
]}

Bauer, Diane ^{[5
]}

Goodstein, David M. ^{[5
]}

Dubchak, Inna ^{[5
]}

Poliakov, Alexandre ^{[5
]}

Mizrachi, Eshchar ^{[1
,2
]}

Kullan, Anand R. K. ^{[1
,2
]}

Hussey, Steven G. ^{[1
,2
]}

Pinard, Desre ^{[1
,2
]}

Van der Merwe, Karen ^{[1
,2
]}

Singh, Pooja ^{[1
,2
]}

Van Jaarsveld, Ida ^{[8
]}

Silva-Junior, Orzenil B. ^{[9
]}

Togawa, Roberto C. ^{[9
]}

Pappas, Marilia R. ^{[3
]}

Faria, Danielle A. ^{[3
]}

Sansaloni, Carolina P. ^{[3
]}

Petroli, Cesar D. ^{[3
]}

Yang, Xiaohan ^{[6
]}

Ranjan, Priya ^{[6
]}

Tschaplinski, Timothy J. ^{[6
]}

Ye, Chu-Yu ^{[6
]}

Li, Ting ^{[6
]}

Sterck, Lieven ^{[10
]}

Vanneste, Kevin ^{[10
]}

Murat, Florent ^{[11
]}

Soler, Maral ^{[12
]}

Clemente, Helene San ^{[12
]}

Saidi, Naijib ^{[12
]}

Cassan-Wang, Hua ^{[12
]}

Dunand, Christophe ^{[12
]}

Hefer, Charles A. ^{[8
,13
]}

Bornberg-Bauer, Erich ^{[14
]}

Kersting, Anna R. ^{[14
,15
]}

Vining, Kelly ^{[16
]}

Amarasinghe, Vindhya ^{[16
]}

Ranik, Martin ^{[16
]}

Naithani, Sushma ^{[17
,18
]}

Elser, Justin ^{[17
]}

Boyd, Alexander E. ^{[18
]}

Liston, Aaron ^{[17
,18
]}

Spatafora, Joseph W. ^{[17
,18
]}

机构：

[1] Univ Pretoria, Dept Genet, Forestry & Agr Biotechnol Inst FABI, ZA-0028 Pretoria, South Africa

[2] Univ Pretoria, Genom Res Inst GRI, ZA-0028 Pretoria, South Africa

[3] EPQB Final W5 Norte, EMBRAPA Recursos Genet & Biotecnol, Lab Genet Vegetal, BR-70770917 Brasilia, DF, Brazil

[4] Univ Catolica Brasilia SGAN 916, Programa Ciencias Genom & Biotecnol, BR-70790160 Brasilia, DF, Brazil

[5] US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

[6] Oak Ridge Natl Lab, Biosci Div, Oak Ridge, TN 37831 USA

[7] HudsonAlpha Inst Biotechnol, Huntsville, AL 35801 USA

[8] Univ Pretoria, Dept Biochem, Bioinformat & Computat Biol Unit, ZA-0028 Pretoria, South Africa

[9] EPQB Final W5 Norte, EMBRAPA Recursos Genet & Biotecnol, Lab Bioinformat, BR-70770917 Brasilia, DF, Brazil

[10] Univ Ghent VIB, Dept Plant Biotechnol & Bioinformat, B-9000 Ghent, Belgium

[11] INRA UBP UMR 1095, F-63100 Clermont Ferrand, France

[12] Univ Toulouse 3, Lab Rech Sci Vegetales, UMR 5546, CNRS, F-31326 Castanet Tolosan, France

[13] Univ British Columbia, Dept Bot, Vancouver, BC V6T 1Z4, Canada

[14] Univ Munster, Inst Evolut & Biodivers, D-48149 Munster, Germany

[15] Univ Dusseldorf, Inst Comp Sci, Dept Bioinformat, D-40225 Dusseldorf, Germany

[16] Oregon State Univ, Dept Forest Ecosyst & Soc, Corvallis, OR 97331 USA

[17] Oregon State Univ, Dept Bot & Plant Pathol, Corvallis, OR 97331 USA

[18] Oregon State Univ, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA

[19] Univ Fed Rio de Janeiro, Dept Genet, Lab Biol Evolut Teor & Aplicada, BR-21949900 Rio de Janeiro, Brazil

[20] EEL USP, Dept Biotecnol, BR-12602810 Lorena, SP, Brazil

[21] Univ Fed Rio de Janeiro, Dept Genet, LGMV, BR-21949900 Rio de Janeiro, Brazil

[22] Australian Natl Univ, Res Sch Biol, Canberra, ACT 0200, Australia

[23] IICT MNE, P-1349007 Lisbon, Portugal

[24] IBET ITQB, P-2781901 Oeiras, Portugal

[25] Univ Arizona, Arizona Genom Inst, Tucson, AZ 85721 USA

[26] Univ Fed Vicosa, Dep Fitopatol, BR-36570000 Vicosa, MG, Brazil

[27] Univ Fed Rio Grande do Sul, Ctr Biotecnol, BR-91501970 Porto Alegre, RS, Brazil

[28] Dept Parks & Wildlife, Sci & Conservat Div, Bentley, WA 6983, Australia

[29] GYDLE, Quebec City, PQ G1T 1Z2, Canada

[30] Victorian Govt, Dept Environm & Primary Ind, Yallambie, Vic 3085, Australia

[31] Univ Melbourne, Melbourne Sch Land & Environm, Melbourne, Vic 3010, Australia

[32] Univ Tasmania, Sch Biol Sci, Hobart, Tas 7001, Australia

[33] Univ Tasmania, Natl Ctr Future Forest Ind, Hobart, Tas 7001, Australia

[34] Univ Sunshine Coast, Fac Sci Hlth Educ & Engn, Sippy Downs, Qld 4558, Australia

[35] Univ Brasilia, Dept Biol Celular, BR-70910900 Brasilia, DF, Brazil

来源：

NATURE | 2014年 / 510卷 / 7505期

基金：

美国国家科学基金会; 新加坡国家研究基金会;

关键词：

WHOLE-GENOME; NUCLEAR-DNA; PLANT; ALIGNMENT; TOOLS; GENE; DIVERSITY; EVOLUTION; DATABASE; TANDEM;

D O I：

10.1038/nature13308

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Eucalypts are the world's most widely planted hardwood trees. Their outstanding diversity, adaptability and growth have made them a global renewable resource of fibre and energy. We sequenced and assembled >94% of the 640-megabase genome of Eucalyptus grandis. Of 36,376 predicted protein-coding genes, 34% occur in tandem duplications, the largest proportion thus far in plant genomes. Eucalyptus also shows the highest diversity of genes for specialized metabolites such as terpenes that act as chemical defence and provide unique pharmaceutical oils. Genome sequencing of the E. grandis sister species E. globulus and a set of inbred E. grandis tree genomes reveals dynamic genome evolution and hotspots of inbreeding depression. The E. grandis genome is the first reference for the eudicot order Myrtales and is placed here sister to the eurosids. This resource expands our understanding of the unique biology of large woody perennials and provides a powerful tool to accelerate comparative biology, breeding and biotechnology.

引用

页码：356 / +

页数：19

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