TXTGate: profiling gene groups with text-based information

被引：48

作者：

Glenisson, P ^{[1
]}

Coessens, B ^{[1
]}

Van Vooren, S ^{[1
]}

Mathys, J ^{[1
]}

Moreau, Y ^{[1
]}

De Moor, B ^{[1
]}

机构：

[1] Katholieke Univ Leuven, Dept Elektrotech ESAT, Fac Toegepaste Wetenschappen, B-3001 Heverlee, Belgium

来源：

GENOME BIOLOGY | 2004年 / 5卷 / 06期

关键词：

D O I：

10.1186/gb-2004-5-6-r43

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

We implemented a framework called TXTGate that combines literature indices of selected public biological resources in a flexible text-mining system designed towards the analysis of groups of genes. By means of tailored vocabularies, term-as well as gene-centric views are offered on selected textual fields and MEDLINE abstracts used in LocusLink and the Saccharomyces Genome Database. Subclustering and links to external resources allow for in-depth analysis of the resulting term profiles.

引用

页数：12

共 29 条

[1] Gene Ontology: tool for the unification of biology [J].

Ashburner, M ;

Ball, CA ;

Blake, JA ;

Botstein, D ;

Butler, H ;

Cherry, JM ;

Davis, AP ;

Dolinski, K ;

Dwight, SS ;

Eppig, JT ;

Harris, MA ;

Hill, DP ;

Issel-Tarver, L ;

Kasarskis, A ;

Lewis, S ;

Matese, JC ;

Richardson, JE ;

Ringwald, M ;

Rubin, GM ;

Sherlock, G .

NATURE GENETICS, 2000, 25 (01) :25-29

[2]

BAEZAYATES RA, 1999, MODERN INFORMATION R

[3] Mining functional information associated with expression arrays [J].

Blaschke C. ;

Oliveros J.C. ;

Valencia A. .

Functional & Integrative Genomics, 2001, 1 (4) :256-268

[4]

CALOGERO R, 2002, P VIRT C GEN BIOINF, V2, P9

[5]

Chaussabel D, 2002, GENOME BIOL, V3

[6] MeKE: discovering the functions of gene products from biomedical literature via sentence alignment [J].

Chiang, JH ;

Yu, HC .

BIOINFORMATICS, 2003, 19 (11) :1417-1422

[7] Cluster analysis and display of genome-wide expression patterns [J].

Eisen, MB ;

Spellman, PT ;

Brown, PO ;

Botstein, D .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (25) :14863-14868

[8]

GERSTEIN M, NATURE ONLINE

[9]

Glenisson P, 2003, Pac Symp Biocomput, P391

[10]

GLENISSON P, 2003, 0397 ESAT SISTA

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