One Dimensional DNA Tiles Self Assembly Model Simulation

被引：0

作者：

Amarioarei, Alexandru ^{[1
]}

Barad, Gefry ^{[1
]}

Czeizler, Elena ^{[3
]}

Czeizler, Eugen ^{[1
,2
]}

Dobre, Ana-Maria ^{[1
]}

Itcus, Corina ^{[1
]}

Paun, Andrei ^{[1
]}

Paun, Mihaela ^{[1
]}

Trandafir, Romica ^{[1
]}

Tusa, Iris

机构：

[1] Natl Inst Res & Dev Biol Sci, Dept Bioinformat, Bucharest, Romania

[2] Abo Akad Univ, Dept Comp Sci, Turku, Finland

[3] Citrus Solut Oy, Helsinki, Finland

来源：

INTERNATIONAL JOURNAL OF UNCONVENTIONAL COMPUTING | 2018年 / 13卷 / 4-5期

关键词：

Tile assembly model; DNA self assembly; computational modeling;

D O I：

暂无

中图分类号：

TP301 [理论、方法];

学科分类号：

081202 ;

摘要：

The TAM (Model Tile Assembly Model) is a mathematical paradigm for modeling DNA self-assembling according to various given shapes, using DNA-tiles (rectangular shape) with sticky ends on each of the four edges that bound together on various shapes desired by the researcher. Although there are various models in the literature, the focus in this manuscript is on a rule based model, specifically the authors present an overview of the one-dimensional hierarchical self-assembly model of DNA tiles. The authors also present the evolution of number of tiles in partial assemblies, the average assembly size and of the number of partial assemblies of sizes 2 through 10 over the total running time. All simulations were run using the NFSim simulator on a preset period of time.

引用

页码：399 / 415

页数：17

共 50 条

[31] Checkpointing of Rectilinear Growth in DNA Self-assembly [J].

Frechette, S. ;

Kim, Y. B. ;

Lombardi, F. .

23RD IEEE INTERNATIONAL SYMPOSIUM ON DEFECT AND FAULT-TOLERANCE IN VLSI SYSTEMS, PROCEEDINGS, 2008, :525-+

[32] Self-assembly of DNA duplex in graphene bilayer [J].

Chan, Kwok Kiong ;

Sun, Tiedong ;

Lu, Yunpeng ;

Shao, Fangwei ;

Zhang, Dawei .

MOLECULAR PHYSICS, 2013, 111 (08) :1053-1060

[33] Dynamic Gold Nanostructures Based on DNA Self Assembly [J].

Kou, Bo ;

Wang, Zhichao ;

Mousavi, Shikufa ;

Wang, Pengfei ;

Ke, Yonggang .

SMALL, 2024, 20 (23)

[34] Self-Assembly-Based Structural DNA Nanotechnology [J].

Zhang, Zhao ;

Fu, Yanming ;

Li, Baojie ;

Feng, Guoyin ;

Li, Can ;

Fan, Chunhai ;

He, Lin .

CURRENT ORGANIC CHEMISTRY, 2011, 15 (04) :534-547

[35] An Image Cryptosystem Based on DNA Self-Assembly [J].

Zhou, Shihua ;

Wang, Bin ;

Zheng, Xuedong ;

Zhou, Changjun ;

Zhang, Qiang .

JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE, 2015, 12 (08) :1852-1857

[36] Application of 3D DNA Self-Assembly for Graph Coloring Problem [J].

Zhang, Xuncai ;

Lin, Minqi ;

Niu, Ying .

JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE, 2011, 8 (10) :2042-2049

[37] Analogical China Map Self-assembled from Single-Stranded DNA Tiles [J].

Wang, Yanfeng ;

Ma, Xin ;

Li, Mengmeng ;

Cui, Guangzhao .

BIO-INSPIRED COMPUTING - THEORIES AND APPLICATIONS, BIC-TA 2015, 2015, 562 :422-431

[38] A 3D DNA Self-assembly Model and Algorithm for Minimum Spanning Tree Problem [J].

Wang, Zicheng ;

Bian, Lizheng ;

Wang, Yanfeng ;

Cui, Guangzhao .

BIO-INSPIRED COMPUTING - THEORIES AND APPLICATIONS, BIC-TA 2014, 2014, 472 :457-462

[39] 3D DNA Self-Assembly Algorithmic Model to Solve the Hamiltonian Path Problem [J].

Ma, Jingjing .

JOURNAL OF NANOELECTRONICS AND OPTOELECTRONICS, 2021, 16 (05) :731-737

[40] A 3D DNA self-assembly model and algorithm for minimum spanning tree problem [J].

Wang, Zicheng ;

Bian, Lizheng ;

Wang, Yanfeng ;

Cui, Guangzhao .

Communications in Computer and Information Science, 2014, 472 :457-462

← 1 2 3 4 5 →