Integrated genomic characterization of adrenocortical carcinoma

被引:521
作者
Assie, Guillaume [1 ,2 ,3 ,4 ]
Letouze, Eric [5 ]
Fassnacht, Martin [6 ,8 ]
Jouinot, Anne [1 ,2 ,3 ]
Luscap, Windy [1 ,2 ,3 ]
Barreau, Olivia [1 ,2 ,3 ,4 ]
Omeiri, Hanin [1 ,2 ,3 ]
Rodriguez, Stephanie [1 ,2 ,3 ]
Perlemoine, Karine [1 ,2 ,3 ]
Rene-Corail, Fernande [1 ,2 ,3 ]
Elarouci, Nabila [5 ]
Sbiera, Silviu [6 ,7 ]
Kroiss, Matthias [8 ]
Allolio, Bruno [7 ]
Waldmann, Jens [9 ]
Quinkler, Marcus [10 ]
Mannelli, Massimo [11 ]
Mantero, Franco [12 ]
Papathomas, Thomas [13 ]
De Krijger, Ronald [13 ]
Tabarin, Antoine [14 ,15 ]
Kerlan, Veronique [15 ,16 ]
Baudin, Eric [15 ,17 ]
Tissier, Frederique [1 ,2 ,3 ,18 ]
Dousset, Bertrand [1 ,2 ,3 ,4 ,19 ]
Groussin, Lionel [1 ,2 ,3 ,4 ]
Amar, Laurence [20 ]
Clauser, Eric [21 ]
Bertagna, Xavier [1 ,2 ,3 ,4 ,15 ]
Ragazzon, Bruno [1 ,2 ,3 ]
Beuschlein, Felix [6 ]
Libe, Rossella [1 ,2 ,3 ,4 ,15 ]
de Reynies, Aurelien [5 ]
Bertherat, Jerome [1 ,2 ,3 ,4 ,15 ]
机构
[1] INSERM, Inst Cochin, U1016, Paris, France
[2] CNRS, UMR 8104, Paris, France
[3] Univ Paris 05, Sorbonne Paris Cite, Paris, France
[4] Hop Cochin, AP HP, Dept Endocrinol, Ctr Rare Adrenal Dis, F-75674 Paris, France
[5] Ligue Natl Canc, Programme Cartes Identite Tumeurs CIT, Paris, France
[6] Univ Munich, Klinikum Univ Munchen, Med Klin & Poliklin 4, Munich, Germany
[7] Univ Hosp Wurzburg, Dept Internal Med 1, Endocrine & Diabet Unit, Wurzburg, Germany
[8] Univ Wurzburg, Comprehens Canc Ctr Mainfranken, D-97070 Wurzburg, Germany
[9] Univ Hosp Giessen & Marburg, Marburg, Germany
[10] Charite, Charite Campus Mitte, Dept Clin Epidemiol, D-13353 Berlin, Germany
[11] Univ Florence, Dept Expt & Clin Biomed Sci, Florence, Italy
[12] Univ Padua, Dept Med, Endocrinol Unit, Padua, Italy
[13] Erasmus MC Univ Med Ctr, Josephine Nefkens Inst, Dept Pathol, Rotterdam, Netherlands
[14] Univ Hosp Bordeaux, Dept Endocrinol Diabet & Metab Dis, Bordeaux, France
[15] Rare Adrenal Canc Network COMETE, Paris, France
[16] Univ Hosp Brest, Dept Endocrinol Diabet & Metab Dis, Brest, France
[17] Univ Paris 11, Inst Gustave Roussy, Dept Nucl Med & Endocrine Oncol, Villejuif, France
[18] Univ Paris 06, Hop La Pitie Salpetriere, AP HP, Dept Pathol, Paris, France
[19] Hop Cochin, AP HP, Dept Digest & Endocrine Surg, F-75674 Paris, France
[20] Hop Europeen Georges Pompidou, AP HP, Hypertens Unit, Paris, France
[21] Hop Cochin, AP HP, Oncogenet Lab, F-75674 Paris, France
关键词
LONG NONCODING RNAS; COPY-NUMBER CHANGES; HUMAN CANCER; MOLECULAR CLASSIFICATION; TUMOR-SUPPRESSOR; MUTATIONS; GENE; EXPRESSION; MANAGEMENT; MICRORNA;
D O I
10.1038/ng.2953
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Adrenocortical carcinomas (ACCs) are aggressive cancers originating in the cortex of the adrenal gland(1). Despite overall poor prognosis, ACC outcome is heterogeneous(2,3). We performed exome sequencing and SNP array analysis of 45 ACCs and identified recurrent alterations in known driver genes(4,5) (CTNNB1, TP53, CDKN2A, RB1 and MEN1) and in genes not previously reported in ACC (ZNRF3, DAXX, TERT and MED12), which we validated in an independent cohort of 77 ACCs. ZNRF3, encoding a cell surface E3 ubiquitin ligase(6), was the most frequently altered gene (21%) and is a potential new tumor suppressor gene related to the beta-catenin pathway. Our integrated genomic analyses further identified two distinct molecular subgroups with opposite outcome. The C1A group of ACCs with poor outcome displayed numerous mutations and DNA methylation alterations, whereas the C1B group of ACCs with good prognosis displayed specific deregulation of two microRNA clusters. Thus, aggressive and indolent ACCs correspond to two distinct molecular entities driven by different oncogenic alterations.
引用
收藏
页码:607 / 612
页数:6
相关论文
共 53 条
[1]   Clinical and biological features in the prognosis of adrenocortical cancer: Poor outcome of cortisol-secreting tumors in a series of 202 consecutive patients [J].
Abiven, Gwenaelle ;
Coste, Joel ;
Groussin, Lionel ;
Anract, Philippe ;
Tissier, Frederique ;
Legmann, Paul ;
Dousset, Bertrand ;
Bertagna, Xavier ;
Bertherat, Jerome .
JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM, 2006, 91 (07) :2650-2655
[2]   Signatures of mutational processes in human cancer [J].
Alexandrov, Ludmil B. ;
Nik-Zainal, Serena ;
Wedge, David C. ;
Aparicio, Samuel A. J. R. ;
Behjati, Sam ;
Biankin, Andrew V. ;
Bignell, Graham R. ;
Bolli, Niccolo ;
Borg, Ake ;
Borresen-Dale, Anne-Lise ;
Boyault, Sandrine ;
Burkhardt, Birgit ;
Butler, Adam P. ;
Caldas, Carlos ;
Davies, Helen R. ;
Desmedt, Christine ;
Eils, Roland ;
Eyfjord, Jorunn Erla ;
Foekens, John A. ;
Greaves, Mel ;
Hosoda, Fumie ;
Hutter, Barbara ;
Ilicic, Tomislav ;
Imbeaud, Sandrine ;
Imielinsk, Marcin ;
Jaeger, Natalie ;
Jones, David T. W. ;
Jones, David ;
Knappskog, Stian ;
Kool, Marcel ;
Lakhani, Sunil R. ;
Lopez-Otin, Carlos ;
Martin, Sancha ;
Munshi, Nikhil C. ;
Nakamura, Hiromi ;
Northcott, Paul A. ;
Pajic, Marina ;
Papaemmanuil, Elli ;
Paradiso, Angelo ;
Pearson, John V. ;
Puente, Xose S. ;
Raine, Keiran ;
Ramakrishna, Manasa ;
Richardson, Andrea L. ;
Richter, Julia ;
Rosenstiel, Philip ;
Schlesner, Matthias ;
Schumacher, Ton N. ;
Span, Paul N. ;
Teague, Jon W. .
NATURE, 2013, 500 (7463) :415-+
[3]   Clinical review: Adrenocortical carcinoma: Clinical update [J].
Allolio, Bruno ;
Fassnacht, Martin .
JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM, 2006, 91 (06) :2027-2037
[4]   Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer [J].
Barbieri, Christopher E. ;
Baca, Sylvan C. ;
Lawrence, Michael S. ;
Demichelis, Francesca ;
Blattner, Mirjam ;
Theurillat, Jean-Philippe ;
White, Thomas A. ;
Stojanov, Petar ;
Van Allen, Eliezer ;
Stransky, Nicolas ;
Nickerson, Elizabeth ;
Chae, Sung-Suk ;
Boysen, Gunther ;
Auclair, Daniel ;
Onofrio, Robert C. ;
Park, Kyung ;
Kitabayashi, Naoki ;
MacDonald, Theresa Y. ;
Sheikh, Karen ;
Vuong, Terry ;
Guiducci, Candace ;
Cibulskis, Kristian ;
Sivachenko, Andrey ;
Carter, Scott L. ;
Saksena, Gordon ;
Voet, Douglas ;
Hussain, Wasay M. ;
Ramos, Alex H. ;
Winckler, Wendy ;
Redman, Michelle C. ;
Ardlie, Kristin ;
Tewari, Ashutosh K. ;
Mosquera, Juan Miguel ;
Rupp, Niels ;
Wild, Peter J. ;
Moch, Holger ;
Morrissey, Colm ;
Nelson, Peter S. ;
Kantoff, Philip W. ;
Gabriel, Stacey B. ;
Golub, Todd R. ;
Meyerson, Matthew ;
Lander, Eric S. ;
Getz, Gad ;
Rubin, Mark A. ;
Garraway, Levi A. .
NATURE GENETICS, 2012, 44 (06) :685-U107
[5]   Identification of a CpG Island Methylator Phenotype in Adrenocortical Carcinomas [J].
Barreau, Olivia ;
Assie, Guillaume ;
Wilmot-Roussel, Hortense ;
Ragazzon, Bruno ;
Baudry, Camille ;
Perlemoine, Karine ;
Rene-Corail, Fernande ;
Bertagna, Xavier ;
Dousset, Bertrand ;
Hamzaoui, Nadim ;
Tissier, Frederique ;
de Reynies, Aurelien ;
Bertherat, Jerome .
JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM, 2013, 98 (01) :E174-E184
[6]   Clinical and Pathophysiological Implications of Chromosomal Alterations in Adrenocortical Tumors: An Integrated Genomic Approach [J].
Barreau, Olivia ;
de Reynies, Aurelien ;
Wilmot-Roussel, Hortense ;
Guillaud-Bataille, Marine ;
Auzan, Colette ;
Rene-Corail, Fernande ;
Tissier, Frederique ;
Dousset, Bertrand ;
Bertagna, Xavier ;
Bertherat, Jerome ;
Clauser, Eric ;
Assie, Guillaume .
JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM, 2012, 97 (02) :E301-E311
[7]   The microRNAs within the DLK1-DIO3 genomic region: involvement in disease pathogenesis [J].
Benetatos, Leonidas ;
Hatzimichael, Eleftheria ;
Londin, Eric ;
Vartholomatos, George ;
Loher, Phillipe ;
Rigoutsos, Isidore ;
Briasoulis, Evangelos .
CELLULAR AND MOLECULAR LIFE SCIENCES, 2013, 70 (05) :795-814
[8]   Serum miR-483-5p and miR-195 are predictive of recurrence risk in adrenocortical cancer patients [J].
Chabre, O. ;
Libe, R. ;
Assie, G. ;
Barreau, O. ;
Bertherat, J. ;
Bertagna, X. ;
Feige, J-J ;
Cherradi, N. .
ENDOCRINE-RELATED CANCER, 2013, 20 (04) :579-594
[9]   Long noncoding RNAs and the genetics of cancer [J].
Cheetham, S. W. ;
Gruhl, F. ;
Mattick, J. S. ;
Dinger, M. E. .
BRITISH JOURNAL OF CANCER, 2013, 108 (12) :2419-2425
[10]   Silencing of the Imprinted DLK1-MEG3 Locus in Human Clinically Nonfunctioning Pituitary Adenomas [J].
Cheunsuchon, Pornsuk ;
Zhou, Yunli ;
Zhang, Xun ;
Lee, Hang ;
Chen, Wendy ;
Nakayama, Yuki ;
Rice, Kimberley A. ;
Hedley-Whyte, E. Tessa ;
Swearingen, Brooke ;
Klibanski, Anne .
AMERICAN JOURNAL OF PATHOLOGY, 2011, 179 (04) :2120-2130