Ferroptosis-related long non-coding RNA signature predicts the prognosis of hepatocellular carcinoma: A Review

被引:3
作者
Bu, Fan [1 ]
Yin, Shijie [1 ]
Guan, Ruiqian [2 ]
Xiao, Yao [1 ]
Zeng, ShuLin [1 ]
Zhao, Yonghou [1 ]
机构
[1] Heilongjiang Univ Chinese Med, Haerbin 150040, Heilongjiang, Peoples R China
[2] Heilongjiang Univ Chinese Med, Affiliated Hosp 2, Haerbin, Peoples R China
基金
中国国家自然科学基金;
关键词
HCC; ferroptosis-related; lncRNA; prognosis; MUSKELIN; 1; IDENTIFICATION; PROGRESSION; EXPRESSION; PROMOTES; CANCER; TARGET;
D O I
10.1097/MD.0000000000031747
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Introduction:Hepatocellular carcinoma (HCC) is a liver cancer. In contrast, ferroptosis is a novel iron-dependent and ROS reliant type of cell death that is observed under various disease conditions. Methods and analysis:RNA sequencing data from HCC patients were downloaded from The Cancer Genome Atlas (TCGA) database. Ferroptosis-related long non-coding RNAs (lncRNAs) were screened by Pearson correlation analysis. Patients were randomized into training or testing sets in a 1:1 ratio. They were constructed in the training set using univariate-Lasso and multivariate Cox regression analysis and further tested for prognostic values in the testing set. Four lncRNAs were identified. Kaplan-Meier analysis showed that patients in the high-risk group had a worse prognosis than those in the low-risk group. Following differentially expressed genes analysis of these two groups. Functional analysis showed association with oxidative stress response. Cox regression analyses showed that risk score was an independent prognostic indicator. Receiver operating characteristic curve (ROC) and decision curve analysis demonstrated the accuracy of prediction. Four ferroptosis-related lncRNAs based on differential expression of HCC were screened by bioinformatic methods to construct a prognostic risk model and accurately predict the prognosis of HCC patients. Four lncRNAs may have a potential role in the anti-tumor immune process and serve as therapeutic targets for HCC. To lay the foundation for subsequent studies.
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页数:12
相关论文
共 33 条
[1]  
Bray F, 2018, CA-CANCER J CLIN, V68, P394, DOI [10.3322/caac.21492, 10.3322/caac.21609]
[2]   Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade [J].
Charoentong, Pornpimol ;
Finotello, Francesca ;
Angelova, Mihaela ;
Mayer, Clemens ;
Efremova, Mirjana ;
Rieder, Dietmar ;
Hackl, Hubert ;
Trajanoski, Zlatko .
CELL REPORTS, 2017, 18 (01) :248-262
[3]   WTAP facilitates progression of hepatocellular carcinoma via m6A-HuR-dependent epigenetic silencing of ETS1 [J].
Chen, Yunhao ;
Peng, Chuanhui ;
Chen, Junru ;
Chen, Diyu ;
Yang, Beng ;
He, Bin ;
Hu, Wendi ;
Zhang, Yanpeng ;
Liu, Hua ;
Dai, Longfei ;
Xie, Haiyang ;
Zhou, Lin ;
Wu, Jian ;
Zheng, Shusen .
MOLECULAR CANCER, 2019, 18 (01)
[4]   Long non-coding RNA muskelin 1 antisense RNA (MKLN1-AS) is a potential diagnostic and prognostic biomarker and therapeutic target for hepatocellular carcinoma [J].
Guo, Chao ;
Zhou, Shuhuang ;
Yi, Weimin ;
Yang, Pingzhou ;
Li, Ou ;
Liu, Jianming ;
Peng, Chuang .
EXPERIMENTAL AND MOLECULAR PATHOLOGY, 2021, 120
[5]   Identification of Autophagy- and Ferroptosis-Related lncRNAs Functioned through Immune-Related Pathways in Head and Neck Squamous Carcinoma [J].
Guo, Qi ;
Zhang, Xuehan ;
Shen, Tao ;
Wang, Xiangting .
LIFE-BASEL, 2021, 11 (08)
[6]   Clinical Value of lncRNA LUCAT1 Expression in Liver Cancer and its Potential Pathways [J].
Jiao, Yan ;
Li, Yanqing ;
Ji, Bai ;
Cai, Hongqiao ;
Liu, Yahui .
JOURNAL OF GASTROINTESTINAL AND LIVER DISEASES, 2019, 28 (04) :439-+
[7]   Identification of miRNAs and their target genes associated with improved maize seed vigor induced by gibberellin [J].
Jin, Yunqian ;
Wang, Bin ;
Tian, Lei ;
Zhao, Linxi ;
Guo, Shulei ;
Zhang, Hengchao ;
Xu, Lengrui ;
Han, Zanping .
FRONTIERS IN PLANT SCIENCE, 2022, 13
[8]  
Li K., 2022, BIOSCIENCE REP
[9]   TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells [J].
Li, Taiwen ;
Fan, Jingyu ;
Wang, Binbin ;
Traugh, Nicole ;
Chen, Qianming ;
Liu, Jun S. ;
Li, Bo ;
Liu, X. Shirley .
CANCER RESEARCH, 2017, 77 (21) :E108-E110
[10]   Molecular mechanism analysis of m6A modification-related lncRNA-miRNA-mRNA network in regulating autophagy in acute pancreatitis [J].
Li, Xiang ;
Qin, Hong ;
Anwar, Ali ;
Zhang, Xingwen ;
Yu, Fang ;
Tan, Zheng ;
Tang, Zhanhong .
ISLETS, 2022, 14 (01) :184-199