Draft Genome Sequence of Streptococcus agalactiae TA B490, a Multidrug-Resistant Strain Isolated from Bovine Mastitis in Argentina

被引：1

作者：

Cadona, J. S. ^{[1
]}

Hernandez, L. B. ^{[1
]}

Lorenzo, R. ^{[2
]}

Bottini, E. ^{[3
]}

Bustamante, A. V. ^{[1
]}

Sanso, A. M. ^{[1
]}

机构：

[1] Univ Nacl Ctr Prov Buenos Aires, Fac Ciencias Vet, Lab Inmunoquim & Biotecnol, Ctr Invest Vet Tandil,CONICET, Tandil, Argentina

[2] Univ Nacl Ctr Prov Buenos Aires, Fac Ciencias Vet, Ctr Invest Vet Tandil, CONICET,CIC,UNCPBA, Tandil, Argentina

[3] Univ Nacl del Ctr Prov Buenos Aires, Fac Ciencias Vet, Ctr Invest Vet Tandil, Lab Microbiol Clin & Expt,CONICET,CIC, Tandil, Argentina

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2021年 / 10卷 / 05期

关键词：

ANNOTATION;

D O I：

10.1128/mra.01429-20

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Streptococcus agalactiae is a bovine pathogen that causes intramammary infections. For humans, S. agalactiae is a leading cause of neonatal death and an emerging pathogen in adults. Here, we present the draft genome sequence of S. agalactiae TA B490, a multidrug-resistant strain isolated from bovine mastitis in Argentina.

引用

页数：3

共 13 条

[1] The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update [J].

Afgan, Enis ;

Baker, Dannon ;

Batut, Berenice ;

van den Beek, Marius ;

Bouvier, Dave ;

Cech, Martin ;

Chilton, John ;

Clements, Dave ;

Coraor, Nate ;

Gruening, Bjoern A. ;

Guerler, Aysam ;

Hillman-Jackson, Jennifer ;

Hiltemann, Saskia ;

Jalili, Vahid ;

Rasche, Helena ;

Soranzo, Nicola ;

Goecks, Jeremy ;

Taylor, James ;

Nekrutenko, Anton ;

Blankenberg, Daniel .

NUCLEIC ACIDS RESEARCH, 2018, 46 (W1) :W537-W544

[2] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[3] ResFinder 4.0 for predictions of phenotypes from genotypes [J].

Bortolaia, Valeria ;

Kaas, Rolf S. ;

Ruppe, Etienne ;

Roberts, Marilyn C. ;

Schwarz, Stefan ;

Cattoir, Vincent ;

Philippon, Alain ;

Allesoe, Rosa L. ;

Rebelo, Ana Rita ;

Florensa, Alfred Ferrer ;

Fagelhauer, Linda ;

Chakraborty, Trinad ;

Neumann, Bernd ;

Werner, Guido ;

Bender, Jennifer K. ;

Stingl, Kerstin ;

Minh Nguyen ;

Coppens, Jasmine ;

Xavier, Basil Britto ;

Malhotra-Kumar, Surbhi ;

Westh, Henrik ;

Pinholt, Mette ;

Anjum, Muna F. ;

Duggett, Nicholas A. ;

Kempf, Isabelle ;

Nykasenoja, Suvi ;

Olkkola, Satu ;

Wieczorek, Kinga ;

Amaro, Ana ;

Clemente, Lurdes ;

Mossong, Joel ;

Losch, Serge ;

Ragimbeau, Catherine ;

Lund, Ole ;

Aarestrup, Frank M. .

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 2020, 75 (12) :3491-3500

[4]

Bushnell B., 2014, 9 ANN GEN EN ENV M W

[5]

Clinical and Laboratory Standards Institute, 2020, Performance Standards for Antimicrobial Susceptibility Testing, V30

[6] RefSeq: an update on prokaryotic genome annotation and curation [J].

Haft, Daniel H. ;

DiCuccio, Michael ;

Badretdin, Azat ;

Brover, Vyacheslav ;

Chetvernin, Vyacheslav ;

O'Neill, Kathleen ;

Li, Wenjun ;

Chitsaz, Farideh ;

Derbyshire, Myra K. ;

Gonzales, Noreen R. ;

Gwadz, Marc ;

Lu, Fu ;

Marchler, Gabriele H. ;

Song, James S. ;

Thanki, Narmada ;

Yamashita, Roxanne A. ;

Zheng, Chanjuan ;

Thibaud-Nissen, Francoise ;

Geer, Lewis Y. ;

Marchler-Bauer, Aron ;

Pruitt, Kim D. .

NUCLEIC ACIDS RESEARCH, 2018, 46 (D1) :D851-D860

[7]

Keefe GP, 1997, CAN VET J, V38, P429

[8] Rapid detection of the "highly virulent" group B streptococcus ST-17 clone [J].

Lamy, Marie-Cecile ;

Dramsi, Shaynoor ;

Billoet, Annick ;

Reglier-Poupet, Helene ;

Tazi, Asmaa ;

Raymond, Josette ;

Guerin, Francois ;

Couve, Elisabeth ;

Kunst, Frank ;

Glaser, Philippe ;

Trieu-Cuot, Patrick ;

Poyart, Claire .

MICROBES AND INFECTION, 2006, 8 (07) :1714-1722

[9]

National Mastitis Council, 2017, Laboratory handbook on bovine mastitis, V3rd ed,, P148

[10] BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs [J].

Simao, Felipe A. ;

Waterhouse, Robert M. ;

Ioannidis, Panagiotis ;

Kriventseva, Evgenia V. ;

Zdobnov, Evgeny M. .

BIOINFORMATICS, 2015, 31 (19) :3210-3212

← 1 2 →