Pressure and protein dynamism

被引:8
作者
Akasaka, Kazuyuki [1 ]
机构
[1] Kinki Univ, Inst Adv Technol, High Pressure Prot Res Ctr, Wakayama 6496493, Japan
关键词
high pressure NMR; linear and nonlinear pressure shifts; high-energy conformers; biological fluctuation; dynamism of life; NUCLEAR-MAGNETIC-RESONANCE; NMR-SPECTROSCOPY; HIGH-RESOLUTION; FLUCTUATIONS; LYSOZYME; SHIFTS; CELL;
D O I
10.1080/08957959.2014.882917
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
The dynamism of life depends critically on the dynamism of bio-macromolecules themselves, notably proteins. The bio-macromolecular dynamism originates from weak non-bonding interactions, which inevitably fluctuate under physiological conditions. The fascination lies in the fact that, in proteins, the basically random non-biological fluctuations of atoms are often turned into specific biological fluctuations of larger amplitude, which would be directly coupled to protein function and consequently the dynamism of life such as growth, motility, sensing, adaptation and disease. The success of the combination of pressure perturbation with advanced nuclear magnetic resonance (NMR) spectroscopy by using the online cell method has provided a powerful means for investigating details of such biological fluctuations, which encompass, in general, a much wider conformational space of a protein than hitherto explored. Some representative strategies of high pressure NMR spectroscopy for characterizing protein dynamism will be discussed with actual examples.
引用
收藏
页码:222 / 235
页数:14
相关论文
共 29 条
[1]   Pressure-induced changes in the folded structure of lysozyme [J].
Akasaka, K ;
Tezuka, T ;
Yamada, H .
JOURNAL OF MOLECULAR BIOLOGY, 1997, 271 (05) :671-678
[2]   Highly fluctuating protein structures revealed by variable-pressure nuclear magnetic resonance [J].
Akasaka, K .
BIOCHEMISTRY, 2003, 42 (37) :10875-10885
[3]   Exploring the entire conformational space of proteins by high-pressure NMR [J].
Akasaka, K .
PURE AND APPLIED CHEMISTRY, 2003, 75 (07) :927-936
[4]  
Akasaka K, 2001, METHOD ENZYMOL, V338, P134
[5]   Low-lying excited states of proteins revealed from nonlinear pressure shifts in 1H and 15N NMR [J].
Akasaka, K ;
Li, H .
BIOCHEMISTRY, 2001, 40 (30) :8665-8671
[6]   Probing conformational fluctuation of proteins by pressure perturbation [J].
Akasaka, Kazuyuki .
CHEMICAL REVIEWS, 2006, 106 (05) :1814-1835
[7]   REVIEW: High pressure NMR study of proteins - seeking roots for function, evolution, disease and food applications [J].
Akasaka, Kazuyuki .
HIGH PRESSURE RESEARCH, 2010, 30 (04) :453-457
[8]   PRINCIPLES THAT GOVERN FOLDING OF PROTEIN CHAINS [J].
ANFINSEN, CB .
SCIENCE, 1973, 181 (4096) :223-230
[9]   THERMODYNAMIC FLUCTUATIONS IN PROTEIN MOLECULES [J].
COOPER, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1976, 73 (08) :2740-2741
[10]   A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations [J].
Duan, Y ;
Wu, C ;
Chowdhury, S ;
Lee, MC ;
Xiong, GM ;
Zhang, W ;
Yang, R ;
Cieplak, P ;
Luo, R ;
Lee, T ;
Caldwell, J ;
Wang, JM ;
Kollman, P .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2003, 24 (16) :1999-2012